DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best2 and best-22

DIOPT Version :9

Sequence 1:NP_729159.2 Gene:Best2 / 38727 FlyBaseID:FBgn0035696 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_001293988.1 Gene:best-22 / 191197 WormBaseID:WBGene00013921 Length:510 Species:Caenorhabditis elegans


Alignment Length:585 Identity:184/585 - (31%)
Similarity:297/585 - (50%) Gaps:107/585 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVSYAGEVPNGSSFGCFWKILWKWRGSVYKLIWRELVAYLCLYYTINVIYRFGLTESQQAIFKK 65
            ||:||..:| :.::...|:.:|.:|||||:|.::.:|..:..::..|:.|||:.|:.|||.:|::
 Worm     1 MTISYTLDV-SQTNLQSFFSLLLRWRGSVWKAVFGQLAVWTAVFLLISCIYRYMLSPSQQDVFEQ 64

  Fly    66 IRLYFGQQSE-SIPMSFVLGFYVNLVVKRWWEQYRLLPWPDTLALFISAAIPNSNGGVNNETGRL 129
            :..||..:.: :||::|:|||:|:.||.||......:.|.|..:|..:..|    .|.:.|| |:
 Worm    65 LIRYFDNKLDANIPLTFLLGFFVSFVVARWGSILNGIGWIDDASLLFATYI----RGADEET-RV 124

  Fly   130 MRRNIMRYMVLAYVITLQRISLRVKRRFPTTQHLVDAGLMHESEMKIFEALNQKSPMSKYWMPLV 194
            :|||::||:||:..:.|:.||::|::||||...|..:|||...||.|.:.:  |.|.|:||..:.
 Worm   125 IRRNLVRYLVLSQALVLRDISMQVRKRFPTMDTLAASGLMTHEEMDILDHI--KDPYSRYWTSIQ 187

  Fly   195 WATNIINRARKDGLIASDHIVQTILVELSDIRRRLGGLIGYDTVCVPLVYTQVVTLVLYTYFIAA 259
            |:.|::...:|.|.:.|.:::..|:.|:...|..|..|:.||.|.|||||.||:.|.:..||:..
 Worm   188 WSLNLVYECQKKGKVDSYYLMNKIVDEIGKFRHGLASLLKYDWVPVPLVYPQVIFLAVRIYFMIC 252

  Fly   260 LLGRQMLPNVLDRSGREDPDLFFPLFTVLQFVFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHI 324
            |:|||.:....:.||   .||:.|:.|::||:.|:||:||||.|:||.||||||:|.|::||:::
 Worm   253 LIGRQFIVTGPNPSG---IDLWLPITTMVQFLVYMGWMKVAEALLNPLGEDDDDLECNYIIDKNL 314

  Fly   325 KAAYMIVDEM--H--------EEH----PELLRDQYWECVVPKDLP-YTVASEHYRKDEPKGSAE 374
            .....|||.|  |        |||    |...:|::|.  :.|..| |::.|.........|||.
 Worm   315 ITGLSIVDTMWKHDDTGYSMVEEHMAKTPAQKKDEFWG--IDKIAPLYSMESAERSVHPLVGSAS 377

  Fly   375 K---YKVKKEDAMYANIMPGGGKRMLSDDVYADYESVDTPMVERRKNNWLVRQLSRMGSMRSQST 436
            |   .|.|||..|                         ||    .||     :||.:..  |:..
 Worm   378 KINLVKNKKEIVM-------------------------TP----HKN-----KLSELDP--SEQK 406

  Fly   437 AYSSGGMPFNRNRLN-SVYSSPESGLPLTILQQQQLQQAHQQQQAGSQ---PSKSSLY------- 490
            .|        ..|:| |.:::..:       :|:.|::|:...:..|:   .|||.|.       
 Worm   407 TY--------LRRVNVSDHNAKHA-------KQRGLERANSPDKCLSKMRSRSKSELQYIQFYEN 456

  Fly   491 GKFVHRKSLRAQRQLIKQNSKLNGLNVNVAKTRPRIPTPEVAKDGNTNPATSSVLMAPQQLSTTS 555
            |||  |.|....:..:...::...:.:|||.:.|....|.           |..:..|::..|||
 Worm   457 GKF--RTSANGSQNGVDLWTRAGDIEMNVATSNPNQVHPH-----------SIAVFPPEEQQTTS 508

  Fly   556  555
             Worm   509  508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best2NP_729159.2 Bestrophin 13..324 CDD:279411 121/311 (39%)
best-22NP_001293988.1 Bestrophin 8..314 CDD:279411 122/316 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 282 1.000 Domainoid score I871
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145964at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm4777
orthoMCL 1 0.900 - - OOG6_101870
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X320
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.820

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