DRSC/TRiP Functional Genomics Resources

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Protein Alignment Best2 and best-20

DIOPT Version :10

Sequence 1:NP_729159.2 Gene:Best2 / 38727 FlyBaseID:FBgn0035696 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_500411.3 Gene:best-20 / 189623 WormBaseID:WBGene00021368 Length:486 Species:Caenorhabditis elegans


Alignment Length:440 Identity:142/440 - (32%)
Similarity:238/440 - (54%) Gaps:31/440 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVSYAGEVPNGSSFGCFWKILWKWRGSVYKLIWRELVAYLCLYYTINVIYRFGL-TESQQAIFK 64
            |||||..:|.:.||.. |.::|.:|:||::|.:..||:.:...|:.|.::|...| .......|.
 Worm     1 MTVSYNSDVSSVSSTN-FLRLLLRWKGSIWKSVSSELMMWCFSYFLIALLYHKVLFPNDYYDSFN 64

  Fly    65 KIRLYFGQQSES-IPMSFVLGFYVNLVVKRWWEQYRLLPWPDTLALFISAAIPNSNGGVNNETGR 128
            .:..|.|::..: ||::|:|.|:|:::|:||...:..:.|.::.||.::|.|.:     ..:..|
 Worm    65 DVAFYCGKELHNYIPLTFMLAFFVSIIVERWRTTFTNMGWIESSALTVNAIIVS-----KCDEAR 124

  Fly   129 LMRRNIMRYMVLAYVITLQRISLRVKRRFPTTQHLVDAGLMHESEMKIFEALNQKSPMSKYWMPL 193
            |:||||:||:|||.::|.:.||:||:||||....:..||.:.::|.::.|.::  ...:|||:|:
 Worm   125 LIRRNIIRYLVLAQILTFRDISIRVRRRFPNIDSIKKAGFLTDNEEELLEGID--LAYNKYWVPI 187

  Fly   194 VWATNIINRARKDGLIASDHIVQTILVELSDIRRRLGGLIGYDTVCVPLVYTQVVTLVLYTYFIA 258
            .||.::.|:|...|.:.|...:.:::.|:...|..|..:..:|...:|:.|.|||...:..||:.
 Worm   188 NWAISLSNQANSKGYVISAPGMVSLIQEIKTFRNGLATICNFDWCPIPIAYPQVVFFAVRIYFLF 252

  Fly   259 ALLGRQML--PNVLDRSGREDPDLFF-PLFTVLQFVFYVGWLKVAEVLINPFGEDDDDIELNWLI 320
            .|:.||.:  ||    ...|...:|. |..|:::|:..|||:||||.|:||.||||||.|.|:||
 Worm   253 CLITRQYIRVPN----KELEPVQMFIRPFITIIEFICIVGWMKVAEALLNPLGEDDDDFESNFLI 313

  Fly   321 DRHIKAAYMIVDEMHEEHPELLRDQYWECVVPKDLP-YTVASE-HYRKDEPKGSAEKYKVKKEDA 383
            |::|.....|||:. :|.|.|..|.:.:   |..:| |:..|: :|:.....||.....:.:.| 
 Worm   314 DKNIFTGMRIVDQF-DEAPPLFEDTFSD---PGAMPIYSEESQKNYQNGALVGSVSNVTLAQFD- 373

  Fly   384 MYANI-MPGGGKRMLSDDVYADYESVDTPMVERRKNNWLVRQLSRMGSMR 432
              .|| |.....|:...|:.|.    |...:.||..:...:..||..|.|
 Worm   374 --ENITMVPVAPRLSIGDINAH----DRSSIRRRFKSGSSQNCSRANSFR 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best2NP_729159.2 Bestrophin 13..322 CDD:460047 106/313 (34%)
best-20NP_500411.3 Bestrophin 8..315 CDD:460047 107/318 (34%)

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