DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best2 and best-10

DIOPT Version :9

Sequence 1:NP_729159.2 Gene:Best2 / 38727 FlyBaseID:FBgn0035696 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_001309516.1 Gene:best-10 / 183586 WormBaseID:WBGene00008185 Length:423 Species:Caenorhabditis elegans


Alignment Length:438 Identity:141/438 - (32%)
Similarity:226/438 - (51%) Gaps:60/438 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVSYAGEVPNGSSFGCFWKILWKWRGSVYKLIWRELVAYLCLYYTINVIYRFGLT----ESQQA 61
            ||::|...| :..|...|.||:..|.||:.|.:|:|.:.:|..||.:..:||..|.    :.|  
 Worm     1 MTITYYRAV-STESISNFLKIIRHWHGSLAKSVWQEFLFWLFPYYVVCAVYRCVLPIIGWDDQ-- 62

  Fly    62 IFKK-IRLYFGQQSESIPMSFVLGFYVNLVVKRWWEQYRLLPWPDTLALFISAAIPN------SN 119
             ||| :.:....|...||:.|:|||:|..|:.||.:.::.:|:.::.|..:|||:|.      |.
 Worm    63 -FKKFVEILSTHQDMYIPLEFMLGFFVTTVIDRWRKSFQNIPYIESCAFAVSAALPGHGALEVSA 126

  Fly   120 GGVNNETGRLMRRNIMRYMVLAYVITLQRISLRVKRRFPTTQHLVDAGLMHESEM-KIFEALNQK 183
            .|:  :|....||.|:||:||:.::..:..|::||:||...:.|||:..:.|:|: ::.|.|..|
 Worm   127 AGM--DTKLTARRTIIRYLVLSQILLFREFSVKVKKRFVDLRSLVDSKFLTENELTELSEELKTK 189

  Fly   184 SPMSKYWMPLVWATNIINRARKDGLIASDHIVQTILVELSDIRRRLGGLIGYDTVCVPLVYTQVV 248
            . ...|.:|:.||.:|:   |.:.|.::...:....| ::|.:.:|..|...|.:.:||.|.|.|
 Worm   190 R-YDSYILPINWAFSIL---RTEKLNSNPQFMNAWNV-INDWQVKLTLLRNGDFIPIPLAYPQAV 249

  Fly   249 TLVLYTYFIAALLGRQMLPNVLDRSGREDPDLFFPLFTVLQFVFYVGWLKVAEVLINPFGEDDDD 313
            .|.:..||:..|..||.    ||.|.....|.||||.|..||:|.|||:||||:|:||.||||||
 Worm   250 FLAVRFYFLVCLFTRQH----LDLSDHHAIDYFFPLLTSFQFIFIVGWMKVAEILLNPMGEDDDD 310

  Fly   314 IELNWLIDRHIKAAYMIVDEM------HEEHPELLRDQYWECVVPKDLPYTVASEHYRKDEPKGS 372
            .|||::||::......|||..      ::|.|:.:.:   :|     ||:      ||||     
 Worm   311 FELNYVIDKNFYIGMTIVDSKDIELTENDEIPDKIGE---DC-----LPF------YRKD----- 356

  Fly   373 AEKYKVKKEDAMYANIMPGGGKRMLSDDVYADYESVDTPMVERRKNNW 420
                  .:|||:....:.|..|..:.:....|  .|:...::...:||
 Worm   357 ------CEEDAIKNRALVGSTKNTMPNQGVMD--KVEENSIQVVDDNW 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best2NP_729159.2 Bestrophin 13..324 CDD:279411 116/322 (36%)
best-10NP_001309516.1 Bestrophin 9..320 CDD:279411 117/325 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3547
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145964at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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