DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best2 and best-4

DIOPT Version :9

Sequence 1:NP_729159.2 Gene:Best2 / 38727 FlyBaseID:FBgn0035696 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_493631.2 Gene:best-4 / 182063 WormBaseID:WBGene00015288 Length:558 Species:Caenorhabditis elegans


Alignment Length:577 Identity:188/577 - (32%)
Similarity:303/577 - (52%) Gaps:90/577 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVSYAGEVPNGSSFGCFWKILWKWRGSVYKLIWRELVAYLCLYYTINVIYRFGLTESQQAIFKK 65
            |||:|:.:|.....|... |:|.:|:|||:|.||.||:.:|..|..::||||..|.::|:.:|::
 Worm     1 MTVAYSLDVATSGLFTQI-KVLLRWKGSVWKSIWSELLIWLLCYSILSVIYRILLNKAQREVFEQ 64

  Fly    66 IRLYFGQQSESIPMSFVLGFYVNLVVKRWWEQYRLLPWPDTLALFISAAIPNSNGGVNNETGRLM 130
            :..:|...|..||::|:|||||::|..||.:.:..:.|.||.||.|:..|..:     :|..||:
 Worm    65 LCTFFDTFSVFIPVTFMLGFYVSIVYNRWTKVFDNVGWIDTSALTIAQYIRGT-----SEKARLI 124

  Fly   131 RRNIMRYMVLAYVITLQRISLRVKRRFPTTQHLVDAGLMHESEMKIFEALNQKSPMSKYWMPLVW 195
            |||.:|||::|.|:..:.:|..::|||||.:||:.|||:.|.|:..|:|:.  ||.||||.|:.|
 Worm   125 RRNCVRYMIVAQVMVFRDVSPAIRRRFPTIKHLIGAGLLTEDELTEFDAIT--SPQSKYWQPIQW 187

  Fly   196 ATNIINRARKDGLIASDHIVQTILVELSDIRRRLGGLIGYDTVCVPLVYTQVVTLVLYTYFIAAL 260
            ..:::..|:.:||||..::...::.::.:.|.::..|:.:|.|.:||||||||.|.:.|||:.||
 Worm   188 LFSLVTVAKDEGLIADSYLYVDLIDKMREFRTKILNLVIFDMVPIPLVYTQVVNLAVRTYFVLAL 252

  Fly   261 LGRQMLPNVLDRSGRE-DPDLFFPLFTVLQFVFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHI 324
            .|||.|.|..:..|.: ..|::||:.|.||.||.||||||:||::||.||||:|.|.||:|:|::
 Worm   253 FGRQFLENNNNIPGAKWKIDIYFPIMTSLQIVFIVGWLKVSEVMLNPLGEDDEDFETNWIIERNL 317

  Fly   325 KAAYMIVDEMHEEHPELLRDQYWECVVPK--DLPYTVASEHYRKDEPKGSAEKYKVKKEDAMYAN 387
            :..|.:||:.:..:|.|.||.:||...|:  |.|.:....|   ...:||.    :...:|...|
 Worm   318 QVGYAVVDQAYGRYPTLKRDPFWEDETPQTMDTPTSTRKAH---SHMQGSC----INMNEADLDN 375

  Fly   388 IMPGGG--------KRMLSDDVYADYESVDTPMVERRKNNWLVRQLSRMGSMRSQSTA-----YS 439
                 |        .|...||..:.:.:.:|    |.::|..:.........|::.:|     |.
 Worm   376 -----GLISYVRRRSRSFGDDDASSFSTENT----RTQSNASMLPRHMWQQPRNKISAAIAKFYK 431

  Fly   440 SGGMP-----------FNRNR-------LNSVYSSPESGLPLTILQQQQLQQAHQQQ---QAGSQ 483
            |...|           .|..|       :..:.::.:..:.:..|.|::::.|.||.   :...:
 Worm   432 SEAEPRRASVCVAALNLNHRRPSTDLREIEPIENTDDVVINVPALVQERIRIAKQQAVKIEIPEE 496

  Fly   484 PSK--SSLYGK------------FV-------------HRKSLR--AQRQLIKQNSK 511
            |.|  :|..||            ||             |||:.|  :...|..||.|
 Worm   497 PLKITASAEGKSAISPSANNVKWFVEEMPVIEEEEERLHRKTPRNLSASSLGNQNGK 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best2NP_729159.2 Bestrophin 13..324 CDD:279411 132/311 (42%)
best-4NP_493631.2 Bestrophin 8..317 CDD:279411 133/316 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 282 1.000 Domainoid score I871
eggNOG 1 0.900 - - E1_KOG3547
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 310 1.000 Inparanoid score I1554
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145964at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm4777
orthoMCL 1 0.900 - - OOG6_101870
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X320
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.770

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