DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best2 and best-14

DIOPT Version :9

Sequence 1:NP_729159.2 Gene:Best2 / 38727 FlyBaseID:FBgn0035696 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_505708.2 Gene:best-14 / 179471 WormBaseID:WBGene00009340 Length:405 Species:Caenorhabditis elegans


Alignment Length:438 Identity:137/438 - (31%)
Similarity:240/438 - (54%) Gaps:42/438 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVSYAGEVPNGSSFGCFWKILWKWRGSVYKLIWRELVAYLCLYYTINVIYRFGLTESQQAIFKK 65
            ||:||..|         |..::.:||||::|.:.::|:.:...||.:.....:.|.|..:..|..
 Worm     1 MTISYDEE---------FSSLMLRWRGSIWKAVLKDLIGFYIAYYIVLAFQWYLLDEKGKEYFTG 56

  Fly    66 IRLYFGQQSESIPMSFVLGFYVNLVVKRWWEQYRLLPWPDTLALFISAAIPNSNGGVNNETGRLM 130
            ..::....::.||:||:|||:|:|:|.|||||:..:.|||.:.:.:||.:|.:...|       :
 Worm    57 WIMWCEIGAQYIPLSFLLGFFVSLIVARWWEQFNCISWPDKMMIMVSACLPGNENMV-------V 114

  Fly   131 RRNIMRYMVLAYVITLQRISLRVKRRFPTTQHLVDAGLMHESEMKIFEALNQKSPMSKYWMPLVW 195
            |:.|.|:..|...|....:|::..:||||.:|:|.:.||.|.|..::  :|..:|..|:::|::|
 Worm   115 RQTIARWSSLQAAIAWSGVSVKTLKRFPTERHMVASKLMTEEEYDLY--MNTDAPHGKWFIPILW 177

  Fly   196 ATNIINRARKDGLIASDHIVQTILVELSDIRRRLGGLIGYDTVCVPLVYTQVVTLVLYTYFIAAL 260
            ..|:|.:.::.|:|.|.. :..:|.::...|.....|..||.:.:||||||||.:..|.||...|
 Worm   178 IVNLIKKQKQKGIIDSIQ-MDMLLKQVYSYRDGFAMLFVYDWIKIPLVYTQVVAIATYGYFFICL 241

  Fly   261 LGRQMLPNVLDRSGREDPDLFFPLFTVLQFVFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHIK 325
            :|||  |.:..||..::..:.||:||..|.:||:|||||.:.|:|||||||||.|||:::||:..
 Worm   242 IGRQ--PKLDQRSMEKEITILFPIFTTFQMLFYLGWLKVGQYLMNPFGEDDDDFELNYVLDRNTA 304

  Fly   326 AAYMIVDEMHEEHPELLRDQYWECVVPKDLPYTVASEHYRKDEPKGSAEKYKVKKEDAMYANIMP 390
            .|:|:..|:.::.|.:     ...:||. :|:|.||...:...||.....:|:.:.:        
 Worm   305 IAHMMASELSDQLPSI-----GAPMVPA-VPHTRASFKIQDVIPKSHLAGFKLSEAE-------- 355

  Fly   391 GGGKRMLSDDVYADYESV--DTPMVERRKNNWLVRQLSRMGSMRSQST 436
               .:::..:...::|.:  :|.:..|::...|||.|.:  ..|:.:|
 Worm   356 ---MKLIKPEDLEEHERLMEETKVTNRQRLGTLVRALEK--KSRTNAT 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best2NP_729159.2 Bestrophin 13..324 CDD:279411 110/310 (35%)
best-14NP_505708.2 Bestrophin 9..302 CDD:279411 109/304 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3547
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D279144at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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