DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best2 and best-6

DIOPT Version :9

Sequence 1:NP_729159.2 Gene:Best2 / 38727 FlyBaseID:FBgn0035696 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_001255268.1 Gene:best-6 / 177270 WormBaseID:WBGene00015628 Length:382 Species:Caenorhabditis elegans


Alignment Length:390 Identity:125/390 - (32%)
Similarity:204/390 - (52%) Gaps:29/390 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVSYAGEVPNGSSFGCFWKILWKWRGSVYKLIWRELVAYLCLYYTINVIYRFGLTESQQAIFKK 65
            ||:||..:|...|.|| |:|:|::|:|||:|||.|||..:|.||||:..||| .|.|.::.||:.
 Worm     1 MTISYTYDVATESYFG-FFKVLFRWKGSVWKLIHRELFMWLVLYYTVLAIYR-TLDEERKKIFRS 63

  Fly    66 IRLYFGQQSESIPMSFVLGFYVNLVVKRWWEQYRLLPWPDTLALFISAAIPNSNGGVNNETGRLM 130
            ...:|.....|| ::|:|.|:|..:|:||...:..:.:.:..|..:|:.:.      |.|..|..
 Worm    64 NIEHFINFEPSI-LTFMLSFFVTTIVQRWNNVFTNMGFIENAAYAVSSFMK------NGEDVRRA 121

  Fly   131 RRNIMRYMVLAYVITLQRISLRVKRRFPTTQHLVDAGLMHESEMKIFEALNQKSPMSKYWMPLVW 195
            :|.::||:|.:.::.::.||::..||||..:.:|.||.:.:.|..|.:  |.........:|:.|
 Worm   122 QRTVIRYLVASQILVMRSISIKALRRFPNYESIVTAGFLTKEESTIIQ--NTDLSYDSSCVPIRW 184

  Fly   196 ATNIINRARKDGLIASDHIVQTILVELSDIRRRLGGLIGYDTVCVPLVYTQVVTLVLYTYFIAAL 260
            |..::....:.|...|..:.:....|:||....|..:...|.|.:||.|.||:...:..||:...
 Worm   185 AIQVLRHQYRSGNFFSHSVYRATWKEVSDFETHLSRVRKVDWVPIPLAYPQVIFFAVRLYFVICA 249

  Fly   261 LGRQMLPNVLDRSGREDPDLFFPLFTVLQFVFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHIK 325
            ..:|.. ::.|...|.....:||:.||.||:..:|||||||.|:||.||||||.|:|:|||.:|.
 Worm   250 FAKQYF-DLDDDDARYVIHYYFPIVTVFQFICLMGWLKVAEALLNPLGEDDDDFEVNFLIDSNIY 313

  Fly   326 AAYMIVDEMHEE--HPELLRDQYWECVVPKDLPYTVASEHYRKDEPK-----GSAEKYKVKKEDA 383
            ...:|::.....  .|:|..|:.:..:.|.::          .|:..     ||.|..|:..:||
 Worm   314 TGMLIIETSKPPPLKPDLFEDRNFGPIYPNNI----------TDQSVGQALCGSVENIKLAGKDA 368

  Fly   384  383
             Worm   369  368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best2NP_729159.2 Bestrophin 13..324 CDD:279411 107/310 (35%)
best-6NP_001255268.1 Bestrophin 8..312 CDD:279411 108/315 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3547
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145964at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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