DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best2 and best-5

DIOPT Version :9

Sequence 1:NP_729159.2 Gene:Best2 / 38727 FlyBaseID:FBgn0035696 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_499142.2 Gene:best-5 / 176367 WormBaseID:WBGene00007404 Length:453 Species:Caenorhabditis elegans


Alignment Length:381 Identity:134/381 - (35%)
Similarity:226/381 - (59%) Gaps:22/381 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 KILWKWRGSVYKLIWRELVAYLCLYYTINVIYRFGLTESQQAIFKKIRLYFGQQSESIPMSFVLG 84
            ::::|||||:::.:::||:.::|.|..::|||||.||.||:.||::...|...:...:|::||||
 Worm    62 RMIFKWRGSLWQAVYKELIVWICAYSLVSVIYRFALTRSQKDIFERFGEYCDARMGYLPLNFVLG 126

  Fly    85 FYVNLVVKRWWEQYRLLPWPDTLALFISAAIPNSNGGVNNETGRLMRRNIMRYMVLAYVITLQRI 149
            |:.|::::||.:.|..|...|.:|||:||.:..:     ::..|.:||||:||.|::..:..:.|
 Worm   127 FFCNIIIRRWLKLYTSLGNIDNIALFVSAYVRGT-----DDRARQIRRNIIRYCVISQCLVFRDI 186

  Fly   150 SLRVKRRFPTTQHLVDAGLMHESEMKIFEALNQKSPMSKYWMPLVWATNIINRARKDGLIASDHI 214
            .:.|:|||||.:.:..||:|...|::.|.::  ||...|||:...||..::|.|:.:..|..|:.
 Worm   187 HVGVRRRFPTLEAVAQAGIMLPHELEKFNSI--KSRYQKYWVSFNWALELLNVAKTEKSIDGDNA 249

  Fly   215 VQTILVELSDIRRRLGGLIGYDTVCVPLVYTQVVTLVLYTYFIAALLGRQMLPNVLDRSGREDPD 279
            ...|..|:|..|..|..:..||.|.:||:|.|:|.:.::|||...:..||...:. |...:.:.|
 Worm   250 RNAIAQEISKFRSALTTVSMYDWVPIPLMYPQLVNMAVHTYFFLCIFTRQFFISA-DAHNKTEVD 313

  Fly   280 LFFPLFTVLQFVFYVGWLKVAEVLINPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLRD 344
            |:.|..|:::|:||:||||||..|:||||||.||.:.|.||||::......||:.:::.||:..|
 Worm   314 LYIPFMTIIEFIFYMGWLKVAMELLNPFGEDADDFDCNLLIDRNLAIGLTSVDDAYDQLPEVKPD 378

  Fly   345 QY-WECVVPKDLPYTVASEHYRKDEPKGSAEKYK----VKKEDAMYANIMPGGGKR 395
            .: ...|.|.|...|.:.:::     .|||.:.:    :|||:    |.|...||:
 Worm   379 VFTGGSVKPLDSDDTRSLKYH-----FGSAAQMEEISYLKKEE----NKMIAAGKK 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best2NP_729159.2 Bestrophin 13..324 CDD:279411 115/303 (38%)
best-5NP_499142.2 Bestrophin 51..358 CDD:279411 115/303 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 282 1.000 Domainoid score I871
eggNOG 1 0.900 - - E1_KOG3547
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145964at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm4777
orthoMCL 1 0.900 - - OOG6_101870
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X320
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.720

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