DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Best2 and best-26

DIOPT Version :9

Sequence 1:NP_729159.2 Gene:Best2 / 38727 FlyBaseID:FBgn0035696 Length:809 Species:Drosophila melanogaster
Sequence 2:NP_493478.1 Gene:best-26 / 173291 WormBaseID:WBGene00014103 Length:411 Species:Caenorhabditis elegans


Alignment Length:441 Identity:140/441 - (31%)
Similarity:225/441 - (51%) Gaps:61/441 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTVSYAGEVPNGSSFGCFWKILWKWRGSVYKLIWRELVAYLCLYYTINVIYRFGLTES--QQAIF 63
            |||.|..:||.|::...|:||:.|.:|:::..|::||..:|.||:...||||..|.:|  |:.|.
 Worm     1 MTVPYYRDVPTGNALRNFFKIMLKRKGNLFTAIFKELCLFLGLYFLFMVIYRLVLPKSGGQREIR 65

  Fly    64 KKIRLYFGQQSESIPMSFVLGFYVNLVVKRWWEQYRLLPWPDTLALFISAA-------IPNSNGG 121
            |.:......|..:||:.|:|||:|:.||.||.:..      |:||...|.|       .|||||.
 Worm    66 KIVENLLSHQEFTIPLEFLLGFFVSSVVDRWRKSL------DSLAYIESCAHAVVIGFPPNSNGS 124

  Fly   122 VNNETGRLMRRNIMRYMVLAYVITLQRISLRVKRRFPTTQHLVDAGLMHESEMKIFEALNQKSPM 186
            ..|   .|:||.|:||:|::.::..:.|||:|:|||.....|..|.|::::|:.....|..|. .
 Worm   125 DKN---LLIRRTIIRYLVVSQILLYREISLKVRRRFKKLTILGKAKLLNQNEIDKLNKLECKH-Y 185

  Fly   187 SKYWMPLVWATNII-NRARKDGLIASDHIVQTIL-VELSDIRRRLGGLIGYDTVCVPLVYTQVVT 249
            ..|::|:.||.::| ::..|:.| |::.   ||| .::.:.:.:|..|...|.:.:||.|.|.|.
 Worm   186 DIYFLPISWALSLIEDKIDKENL-ANEF---TILWGQIKEWQTKLSLLRNCDYIPIPLAYPQAVF 246

  Fly   250 LVLYTYFIAALLGRQMLPNVLDRSGREDPDL-----FFPLFTVLQFVFYVGWLKVAEVLINPFGE 309
            |.:..||...:..||.|       .|.|..:     |||:.|..|::|.:||:||||:|:||.||
 Worm   247 LAVRCYFAVCVFTRQHL-------DRYDSKMHTWITFFPVLTTFQYIFMMGWMKVAEILLNPMGE 304

  Fly   310 DDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLRDQYWECVVPKDL-PYTVASEHYRKDEPKGSA 373
            |:||.|||::||.::|....||..:...|.:|...:     :..|. ||                
 Worm   305 DEDDFELNFIIDNNLKNGLDIVSGLCGNHRKLAEHE-----IENDCRPY---------------- 348

  Fly   374 EKYKVKKEDAMYANIMPGGGKRMLSDDVYADYESVDTPMVERRKNNWLVRQ 424
              |:..::|.......|...|.:.......:..|.|:|||.:.::...:|:
 Worm   349 --YQTNEQDRKKNRAPPESLKNVEFKSFTMEKASKDSPMVVKSESVCCLRR 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Best2NP_729159.2 Bestrophin 13..324 CDD:279411 115/326 (35%)
best-26NP_493478.1 Bestrophin 15..319 CDD:279411 115/324 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3547
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D145964at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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