DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mdr65 and Abcb10

DIOPT Version :9

Sequence 1:NP_476831.1 Gene:Mdr65 / 38726 FlyBaseID:FBgn0004513 Length:1302 Species:Drosophila melanogaster
Sequence 2:NP_062425.1 Gene:Abcb10 / 56199 MGIID:1860508 Length:715 Species:Mus musculus


Alignment Length:607 Identity:210/607 - (34%)
Similarity:326/607 - (53%) Gaps:59/607 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   720 RILQLAKQEWCYLILGTISAVAVGFLYPAFAV----------IFGEFYAALAEKDPEDALRRTAV 774
            ::|.|.:.|     .|.:|| |||||..:..:          |....|...:|...:...|..||
Mouse   124 KLLGLVRPE-----RGRLSA-AVGFLAVSSVITMSAPFFLGRIIDVIYTNPSEGYGDSLTRLCAV 182

  Fly   775 LSWACLGLAFLTGLVC-FLQTYLFNYAGIWLTTRMRAMTFNAMVNQEVGWFDDENNSVGALSARL 838
            |:  |:   ||.|... .::.||...:|..:..|:|...|::::.|||.:||  ....|.|..||
Mouse   183 LT--CV---FLCGAAANGIRVYLMQSSGQSIVNRLRTSLFSSILRQEVAFFD--KTRTGELINRL 240

  Fly   839 SGEAVDIQGAIGYPLSGMIQALSNFISSVSVAMYYNWKLALLCLANCPIIVGSVILEAKMMSNAV 903
            |.:...:..::...||..::|.:.....|.:..:.:..||...|:..|.|....::..:.:....
Mouse   241 SSDTALLGRSVTENLSDGLRAGAQASVGVGMMFFVSPSLATFVLSVVPPISVLAVIYGRYLRKLS 305

  Fly   904 VREKQVIEEACRIATESITNIRTVAGLRREADVIREYTEEIQRVEVLIRQKLRWRGVLNSTMQAS 968
            ...:..:.||.::|.|.|.||||:....:|...:.:||..:.::..|.:::         .:..:
Mouse   306 KATQDSLAEATQLAEERIGNIRTIRAFGKEMTEVEKYTGRVDQLLQLAQKE---------ALARA 361

  Fly   969 AFFAYA--------VALCY-GGVLVSEGQLPFQDIIKVSETLLYGSMMLAQSLAFTPAFSAALI- 1023
            .||..|        :::.| ||:|:....:   .:.::|..|:| :..:..|:....:|.:.|: 
Mouse   362 GFFGAAGLSGNLIVLSVLYKGGLLMGSAHM---TVGELSSFLMY-AFWVGLSIGGLSSFYSELMK 422

  Fly  1024 ---AGHRLFQILDRKPKIQSPMGTIKNTLAKQLNLFEG-VRYRGIQFRYPTRPDAKILNGLDLEV 1084
               ||.||:::|:|:|::....|.:.:.     ..|:| :.:|.:.|.||.||:..:.....|.:
Mouse   423 GLGAGGRLWELLERQPRLPFNEGMVLDE-----KTFQGALEFRNVHFTYPARPEVSVFQDFSLSI 482

  Fly  1085 LKGQTVALVGHSGCGKSTCVQLLQRYYDPDEGTIHIDHDDIQHDLTLDGVRTKLGIVSQEPTLFE 1149
            ..|...||||.||.||||.|.||.|.|||:.||:.:|..||: .|....:|:|:|.|||||.||.
Mouse   483 PSGSVTALVGPSGSGKSTVVSLLLRLYDPNSGTVSLDGHDIR-QLNPVWLRSKIGTVSQEPVLFS 546

  Fly  1150 RSIAENIAYG-DNRRSVSMVEIIAAAKSANAHSFIISLPNGYDTRMGARGTQLSGGQKQRIAIAR 1213
            .|:||||||| ||..||:..::..||:.|||..||.|.|.|:||.:|.:|..|||||||||||||
Mouse   547 CSVAENIAYGADNLSSVTAQQVERAAEVANAAEFIRSFPQGFDTVVGEKGILLSGGQKQRIAIAR 611

  Fly  1214 ALVRNPKILLLDEATSALDLQSEQLVQQALDTACSGRTCIVIAHRLSTVQNADVICVIQNGQVVE 1278
            ||::|||||||||||||||.::|.|||:|||....|||.::|||||||::||:.:.|:.:|::.|
Mouse   612 ALLKNPKILLLDEATSALDAENEHLVQEALDRLMEGRTVLIIAHRLSTIKNANFVAVLDHGKICE 676

  Fly  1279 QGNHMQ-LISQGGIYAKLHKTQ 1299
            .|.|.: |:...|:|.||...|
Mouse   677 HGTHEELLLKPNGLYRKLMNKQ 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdr65NP_476831.1 PTZ00265 91..1300 CDD:240339 210/607 (35%)
ABC_membrane 108..354 CDD:279056
ABC_MTABC3_MDL1_MDL2 405..642 CDD:213216
ABC_membrane 736..1006 CDD:279056 66/289 (23%)
ABC_MTABC3_MDL1_MDL2 1059..1299 CDD:213216 126/241 (52%)
Abcb10NP_062425.1 3a01208 8..694 CDD:273363 207/601 (34%)
ABC_membrane 142..403 CDD:279056 61/280 (22%)
ABC_MTABC3_MDL1_MDL2 458..698 CDD:213216 126/240 (53%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100059
Panther 1 1.100 - - LDO PTHR24221
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

Return to query results.
Submit another query.