DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdr65 and pgp-2

DIOPT Version :9

Sequence 1:NP_476831.1 Gene:Mdr65 / 38726 FlyBaseID:FBgn0004513 Length:1302 Species:Drosophila melanogaster
Sequence 2:NP_001300410.1 Gene:pgp-2 / 172262 WormBaseID:WBGene00003996 Length:1296 Species:Caenorhabditis elegans


Alignment Length:1333 Identity:495/1333 - (37%)
Similarity:742/1333 - (55%) Gaps:93/1333 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ERDEVSTSSSEGKSQEEAPMAEGLEPTEPIAFLKLFRFSTYGEIGWLFFGFIMCCIKALTLPAVV 66
            :|.:.|.||....|..:       |.|..:....:|.::...::..|..|.:...|.....|.:.
 Worm    18 QRSQTSLSSHSSDSSID-------ESTVKLTNYGIFYYTQGVDLLLLITGTVAAVIHGAGFPLLA 75

  Fly    67 IIYSEFTSMLVDRAMQ----FGTSSNVHALPLFGGGKTLTNASREENNEALYDDSISYGILLTIA 127
            |:....|::.: ||..    .|. .||:.       :.|...|.:|.|    .:.:.|.|...:.
 Worm    76 IVLGGMTTVFL-RAQNSDFVVGV-DNVNP-------EGLVPISLDEFN----SEVVKYCIYYLVL 127

  Fly   128 SVVMFISGIFSVDVFNMVALRQVTRMRIKLFSSVIRQDIGWHDLASKQNFTQSMVDDVEKIRDGI 192
            .|:||.:....:..|...|.|.|.::|.....:::||.|.|.|.....|.|..:.||:|::|:|:
 Worm   128 GVLMFFTSYVQIACFESYAERLVHKLRQNYLKAILRQQIQWFDKQQTGNLTARLTDDLERVREGL 192

  Fly   193 SEKVGHFVYLVVGFIITVAISFSYGWKLTLAVSSYIPLVILLNYYVAKFQGKLTAREQESYAGAG 257
            .:|....|.:...|:....:.|.|.|.:||.:..:.||::|....::|.....|..|||:||.||
 Worm   193 GDKFALLVQMFAAFLAGYGVGFFYSWSMTLVMMGFAPLIVLSGAKMSKSMATRTRVEQETYAVAG 257

  Fly   258 NLAEEILSSIRTVVSFGGEKSEVQRYENFLVPARKASQWKGAFSGLSDAVLKSMLYLSCAGAFWY 322
            .:|||..||||||.|..|.|.|:.|:.|.|...|:....|..:.|:........:|.|.|.||||
 Worm   258 AIAEETFSSIRTVHSLNGHKRELDRFYNALEVGRQTGIVKYCYMGIGVGFSNLCMYSSYALAFWY 322

  Fly   323 GVNLIIDDRNVENKEYTPAILMIAFFGIIVGADNIARTAPFLESFATARGCATNLFKVIDLTSKI 387
            |..|||:|...:.     .::...||.::.|:.::....|.|.||.||||.|:.:.:||:...||
 Worm   323 GSTLIINDPTFDR-----GLIFTVFFAVLSGSTSLGGALPHLASFGTARGAASTVLRVINSHPKI 382

  Fly   388 DPLSTDGKLLNYGLRGDVEFQDVFFRYPSRPEVIVHRGLNIRIRAGQTVALVGSSGCGKSTCVQL 452
            ||.|.:|.|:: .::||:.|:||.||||||.::.|.:|:::.::||..:||||||||||||.|.|
 Worm   383 DPYSLEGILVD-NMKGDISFKDVHFRYPSRKDIHVLKGISLELKAGDKIALVGSSGCGKSTIVNL 446

  Fly   453 LQRFYDPVFGSVLLDDLDIRKYNIQWLRSNIAVVGQEPVLFLGTIAQNISYGKPGATQKEIEAAA 517
            |||||||..|.||:|.:|:|:.|:..||..|.:|.||||||.|||.:||..|...||..::..|.
 Worm   447 LQRFYDPTKGRVLIDGVDLREVNVHSLREQIGIVSQEPVLFDGTIYENIKMGNEHATHDQVVEAC 511

  Fly   518 TQAGAHEFITNLPESYRSMIGERGSQLSGGQKQRIAIARALIQNPKILLLDEATSALDYQSEKQV 582
            ..|.|::||..||:.|.:.:||:|.||||||||||||||||::|||||||||||||||.::|::|
 Worm   512 KMANANDFIKRLPDGYGTRVGEKGVQLSGGQKQRIAIARALVKNPKILLLDEATSALDTEAEREV 576

  Fly   583 QQALDLASKGRTTIVVSHRLSAIRGADKIVFIHDGKVLEEGSHDDLMALEGAYYNMVRAGDINMP 647
            |.|||.|..|||||:|:||||.||..|:|.....|.::|.|||::||:.:|.:|:|.:|..:...
 Worm   577 QGALDQAQAGRTTIIVAHRLSTIRNVDRIFVFKAGNIVESGSHEELMSKQGIFYDMTQAQVVRQQ 641

  Fly   648 DEVEKEDSIEDT---------KQKSLALFEKSFETS------------PLNFEKGQKNSVQFEEP 691
            .:...:| ||||         .:||......|..||            |.|   ||.|     :.
 Worm   642 QQEAGKD-IEDTISESAHSHLSRKSSTRSAISIATSIHQLAEEVELIDPFN---GQTN-----QD 697

  Fly   692 IIKALIKDTNAQSAEAPPEKPNFFRTFSRILQLAKQEWCYLILGTISAVAVGFLYPAFAVIFGEF 756
            :|::.|........:|||  .:.|:.|.  ....|..|  .|.|...|...|.:.|.||:::.|.
 Worm   698 VIRSRILSAFGGECKAPP--TSMFKIFK--FNGDKVGW--FIGGIFGAFIFGSVTPVFALVYAEI 756

  Fly   757 YAALAEKDPEDALRRTAVLSW----ACLGLAFLTGLVCFLQTYLFNYAGIWLTTRMRAMTFNAMV 817
            :...:.  |.|.::.. |..|    ..:|:.|..|.  |.........|..||.::|...|..::
 Worm   757 FNVYSL--PADQMQAN-VYFWCGMFVLMGITFFVGF--FTSANCLGRCGESLTMKLRFEAFKNLL 816

  Fly   818 NQEVGWFDDENNSVGALSARLSGEAVDIQGAIGYPLSGMIQALSNFIS---SVSVAMYYNWKLAL 879
            .|::.::||..:..|.|..|.:.:|.:::    |..:.:...|::.::   ::.:..||.|:|||
 Worm   817 RQDIAFYDDLRHGTGKLCTRFATDAPNVR----YVFTRLPVVLASIVTICGALGIGFYYGWQLAL 877

  Fly   880 LCLANCPIIVGSVILEAKMMSNAVVREKQVIEEACRIATESITNIRTVAGLRREADVIREYTEEI 944
            :.:...|::|.....|.:|.....:|:.|::|||.::|::::.:||||..|.|:......|.|.:
 Worm   878 ILVVMVPLLVMGGYFEMQMRFGKQIRDTQLLEEAGKVASQAVEHIRTVHSLNRQEQFHFTYCEYL 942

  Fly   945 QRVEVLIRQKLRWRGVLNSTMQASAFFAYAVALCYGGVLVSEGQLPFQDIIKVSETLLYGSMMLA 1009
            :.......:.....|.:.:..|:..||.||.|...|.:.|::..:...|:.:|...:.:...|:.
 Worm   943 REPFNTNLKHAHTYGAVFAFSQSLIFFMYAAAFYLGSIFVNQQAMQPIDVYRVFFAISFCGQMIG 1007

  Fly  1010 QSLAFTPAFSAALIAGHRLFQILDRKPKIQ--SPMGTIKNTLAKQLNLFEGVRYRGIQFRYPTRP 1072
            .:.:|.|....|.:|...||.:::....|.  |..|.:|       .:...:..|.:.|.||||.
 Worm  1008 NTTSFIPDVVKARLAASLLFYLIEHPTPIDSLSDSGIVK-------PITGNISIRNVFFNYPTRK 1065

  Fly  1073 DAKILNGLDLEVLKGQTVALVGHSGCGKSTCVQLLQRYYDPDEGTIHIDHDDIQHDLTLDGVRTK 1137
            |.|:|.|..|::..|:||||||||||||||.:.||:|:|:.|:|.|.||.|:|: :|.:..:|.:
 Worm  1066 DTKVLQGFTLDIKAGKTVALVGHSGCGKSTIMGLLERFYNQDKGMIMIDGDNIR-NLNISSLREQ 1129

  Fly  1138 LGIVSQEPTLFERSIAENIAYGDNRRSVSMVEIIAAAKSANAHSFIISLPNGYDTRMGARGTQLS 1202
            :.|||||||||:.:|.|||.||.| |:|:..||:.|||.||.|:||:.||:||||.:|.:|||||
 Worm  1130 VCIVSQEPTLFDCTIGENICYGTN-RNVTYQEIVEAAKMANIHNFILGLPDGYDTHVGEKGTQLS 1193

  Fly  1203 GGQKQRIAIARALVRNPKILLLDEATSALDLQSEQLVQQALDTACSGRTCIVIAHRLSTVQNADV 1267
            |||||||||||||||:|.:|||||||||||.:||::||:|||.|..||||:||||||||:||:||
 Worm  1194 GGQKQRIAIARALVRSPSVLLLDEATSALDTESEKIVQEALDAAKQGRTCLVIAHRLSTIQNSDV 1258

  Fly  1268 ICVIQNGQVVEQGNHMQLISQGGIYAKLHKTQK 1300
            |.::..|::||:|.|.:||.:..||.|..:||:
 Worm  1259 IAIVSEGKIVEKGTHDELIRKSEIYQKFCETQR 1291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdr65NP_476831.1 PTZ00265 91..1300 CDD:240339 475/1238 (38%)
ABC_membrane 108..354 CDD:279056 77/245 (31%)
ABC_MTABC3_MDL1_MDL2 405..642 CDD:213216 132/236 (56%)
ABC_membrane 736..1006 CDD:279056 63/276 (23%)
ABC_MTABC3_MDL1_MDL2 1059..1299 CDD:213216 141/239 (59%)
pgp-2NP_001300410.1 PTZ00265 56..1286 CDD:240339 484/1281 (38%)
ABC_membrane 61..349 CDD:279056 88/305 (29%)
ABC_MTABC3_MDL1_MDL2 399..632 CDD:213216 131/232 (56%)
ABC_membrane 736..999 CDD:279056 63/271 (23%)
ABC_MTABC3_MDL1_MDL2 1052..1290 CDD:213216 141/239 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 189 1.000 Domainoid score I1944
eggNOG 1 0.900 - - E2759_KOG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG63700
OrthoDB 1 1.010 - - D186078at2759
OrthoFinder 1 1.000 - - FOG0000106
OrthoInspector 1 1.000 - - mtm4744
orthoMCL 1 0.900 - - OOG6_100059
Panther 1 1.100 - - O PTHR24221
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R932
SonicParanoid 1 1.000 - - X92
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.820

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