DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdr65 and tap2

DIOPT Version :9

Sequence 1:NP_476831.1 Gene:Mdr65 / 38726 FlyBaseID:FBgn0004513 Length:1302 Species:Drosophila melanogaster
Sequence 2:XP_002942649.3 Gene:tap2 / 100489020 XenbaseID:XB-GENE-481680 Length:728 Species:Xenopus tropicalis


Alignment Length:650 Identity:197/650 - (30%)
Similarity:327/650 - (50%) Gaps:94/650 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DEVSTSSSEGKSQEEAPMAEGLEPTEPIAFLK-----------LFRFSTYGEIGWLFFGFIMCCI 57
            |.||.:....||.|....::..|....|..||           .|.|.|...||.:|..:.|..:
 Frog   128 DLVSPNILPNKSAEGEANSKKRERENFIRLLKYSIPDWLPLCGAFVFLTLALIGEMFIPYYMGRV 192

  Fly    58 KALTLPAVVIIYSEFTSMLVDRAMQFGTSSNVHALPLFGGGKTLTNASREENNEALYDDSISYGI 122
                   :.|:.:.:......|||.|....::.: .:|.|.:                       
 Frog   193 -------IDILSTNYNEREFLRAMSFMAMFSITS-SIFAGSR----------------------- 226

  Fly   123 LLTIASVVMFISGIFSVDVFNMVALRQVTRMRIKLFSSVIRQDIGWHDLASKQNFTQSMVDDVEK 187
                       .|:|   :|::..|.|  |:|:.||.|||:|:|.:.:.....:.|..:.:|..:
 Frog   227 -----------GGLF---MFSLARLTQ--RLRLLLFRSVIKQEIAFFEATKSGDITSRLTNDTAR 275

  Fly   188 IRDGISEKVGHFVYLVVGFIITVAISFSYGWKLTLA--VSSYIPLVI--LLNYYVAKFQGKLTAR 248
            :...|:..|...:.::|..:...:..||..|:|||.  :||.:..:|  :.|||    ...|..|
 Frog   276 VSRSIAANVNITLRMLVKCVGVYSFMFSLSWQLTLLTFISSPLTWIIQKVYNYY----HQDLVKR 336

  Fly   249 EQESYAGAGNLAEEILSSIRTVVSFGGEKSEVQRYENFLVPARKASQWKGAFSGLSDAVLK---- 309
            .|:|.|.:..||:||:.|:|.|.||..|:.|.:||||.|.........:...:.|...|.:    
 Frog   337 VQDSIARSSELAKEIIESVRNVYSFAAEEEEAKRYENSLQETHVLQTRRDFVTALYLLVTRLVNL 401

  Fly   310 ----SMLYLSCAGAFWYGVNLIIDDRNVENKEYTPAILMIAFFGIIVGADNIART-APFLESFAT 369
                :|||        ||..||       ...:..:..|::|....:.:|:..|| ...|.....
 Frog   402 GTQVTMLY--------YGQILI-------RSGFISSGKMVSFILYQMESDSYIRTLVHMLSEITH 451

  Fly   370 ARGCATNLFKVIDLTSKIDPLSTDGKLLNYGLRGDVEFQDVFFRYPSRPEVIVHRGLNIRIRAGQ 434
            |.|.|..:|:.:|...::   |..|.|....|:|..||.:|.|.||||||::..:.::..:..|.
 Frog   452 AAGAAEKVFQYLDREPQV---SASGCLCPGTLQGRFEFSNVTFSYPSRPEILALQNVSFTLPPGS 513

  Fly   435 TVALVGSSGCGKSTCVQLLQRFYDPVFGSVLLDDLDIRKYNIQWLRSNIAVVGQEPVLFLGTIAQ 499
            ..||||.||.||:|||.||:|||:|..|::|||...:::|..::|.|.:|:|.||||||.|::.:
 Frog   514 VTALVGPSGGGKTTCVSLLERFYEPQGGNILLDGKPLKEYKHEYLHSKVALVAQEPVLFAGSVRE 578

  Fly   500 NISYGKPGATQKEIEAAATQAGAHEFITNLPESYRSMIGERGSQLSGGQKQRIAIARALIQNPKI 564
            |||||.....:::::|||.:|.|.:||..:.::|.:.:|..|:|||.|||||:|:||||.:.||:
 Frog   579 NISYGLYNIPEEKLKAAARKAKAEDFIEGMEKAYDTDVGNSGAQLSAGQKQRVALARALARKPKL 643

  Fly   565 LLLDEATSALDYQSEKQVQQALDLASKGRTTIVVSHRLSAIRGADKIVFIHDGKVLEEGSHDDLM 629
            |:||||:|.||.::|.::|::|. :.:..:.::::|||..::.||:|:.:..|.::|:|:|:.|:
 Frog   644 LILDEASSCLDAETEHEIQKSLQ-SIEDLSLLIIAHRLRTVQKADQILVLEAGNLVEQGTHEKLV 707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdr65NP_476831.1 PTZ00265 91..1300 CDD:240339 175/551 (32%)
ABC_membrane 108..354 CDD:279056 63/257 (25%)
ABC_MTABC3_MDL1_MDL2 405..642 CDD:213216 96/224 (43%)
ABC_membrane 736..1006 CDD:279056
ABC_MTABC3_MDL1_MDL2 1059..1299 CDD:213216
tap2XP_002942649.3 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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