DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10226 and abcb8

DIOPT Version :9

Sequence 1:NP_648040.1 Gene:CG10226 / 38725 FlyBaseID:FBgn0035695 Length:1320 Species:Drosophila melanogaster
Sequence 2:NP_001121515.1 Gene:abcb8 / 100158634 XenbaseID:XB-GENE-1010256 Length:688 Species:Xenopus tropicalis


Alignment Length:584 Identity:192/584 - (32%)
Similarity:306/584 - (52%) Gaps:33/584 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 ELVAMFIERTLGQGTSSVTIGLSLFGGGKILTNASYEEN-----MQELRKDSVSFGILMTLNTLL 135
            :|:|:.....|..|.:.:.|.:.|..|..:...:.|...     :||::..::.  :|.......
 Frog   116 QLIALLTAVLLAFGAALLNIRIPLMLGELVNVVSRYTREHAGNYLQEVQGPALK--LLCLYGAQG 178

  Fly   136 MLFSGVYYVDAFNRLALKLTVRMRREFFKATLRQEIGWHDMAKDQNFAVRITDNMEKIRSGIAEN 200
            :|..|  |:...:|:..::...||:..|.:.|||::.:.|..|......|:|.::::.:|...:.
 Frog   179 LLTCG--YIVLLSRVGERVAGSMRKSLFFSLLRQDVAFFDAEKTGLLVNRLTSDVQEFKSSFKQV 241

  Fly   201 LGHYVEIMCDVIISVVLSFIYGWKLALAIVFYIPLTLVVNSAVAHYQGKLTGQEQSSYVRASSVV 265
            :...:..:...:...:..:....||...::..:|:.:...:.:..:..||:.:.|....||:.:.
 Frog   242 ISQGLRSLTQTVGCFLSLYYISPKLTGLLLVVMPVLVGSGALIGSFLRKLSRRAQEQVARATGLA 306

  Fly   266 EEVIGAIRTVVAFGGERSESLRYDSLLKPALKAGKWKG----AFSGLSDTVMKAMLFITGAGSFW 326
            :|.:|.:|||.||..|..|...|.:.:..:....:..|    .|.|||:.|:..::.    |:.:
 Frog   307 DEALGNVRTVKAFAMESREMELYSAEVDKSSGQNEVLGVGIAVFQGLSNVVLNCIVL----GTIF 367

  Fly   327 YGANLILYYRDPSIPIDEREYTPAVVMIVISGIIVSANQISRTSPFLET-FAMARGSASAILDVI 390
            .|.:|          :..:|.:...:|    ..:|::..:.|:...:.. |.......||...|.
 Frog   368 AGGSL----------MSSKELSAGELM----SFLVASQTVQRSMANMSVLFGQVVRGLSAGGRVF 418

  Fly   391 DRTSLIDPLSKAGKILNYGLKGAVEFRDVFFRYPAREDVIVLRGLNVVVEEGQTVALVGPSGCGK 455
            :..||...:..:|......|:|.:.|:||.|.||.|....|||..::.:..|:||||||.||.||
 Frog   419 EFMSLEPTIPLSGGFKLPVLRGEIHFKDVSFSYPTRPGHEVLRSFDLRIPHGKTVALVGQSGGGK 483

  Fly   456 STCIQLLQRFYDPVFGQVLLDGEDVRKYNIKWLRSN-IAVVGQEPVLFQGSIGENIRHGKPEATQ 519
            ||...||:|||||..|.|.|||.|:|..:..|||.. |..:.||||||..:|.||||.|:|:||.
 Frog   484 STVAALLERFYDPTEGAVQLDGVDIRILDPSWLRGEVIGFINQEPVLFGTTIIENIRFGRPDATD 548

  Fly   520 KEVEDAAKAANAHDFIIALHKGYDTDISEKGVQLSGGQRQRIAIARALIQQPKILLLDEATSALD 584
            .||.:||..|||..||.:..:||:|.:.|:||.|||||:||:||||||::.||||:|||||||||
 Frog   549 AEVHEAAIQANADSFIRSFPEGYNTMLGERGVTLSGGQKQRVAIARALLKDPKILILDEATSALD 613

  Fly   585 YHSEKLVQAALDKACKGRTTLVVSHRLSAIRHAHRIVYIENGKAVEQGTHEELMKLEGFYHKMV 648
            ..||:.||.|||:|..|||.||::||||.|..|..||.:..|:..|.|||::|::..|.|..::
 Frog   614 TESERAVQVALDRARSGRTVLVIAHRLSTISEADFIVVLSKGQVAEFGTHQDLLRRGGLYADLI 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10226NP_648040.1 PTZ00265 81..1311 CDD:240339 190/579 (33%)
ABC_membrane <147..333 CDD:279056 39/189 (21%)
ABC_MTABC3_MDL1_MDL2 414..649 CDD:213216 126/236 (53%)
ABC_membrane 749..1019 CDD:279056
ABC_MTABC3_MDL1_MDL2 1076..1316 CDD:213216
abcb8NP_001121515.1 ABC_6TM_ABCB8_like 123..417 CDD:350018 58/315 (18%)
MsbA_rel 187..680 CDD:131259 178/509 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.