Sequence 1: | NP_476617.1 | Gene: | LanA / 38723 | FlyBaseID: | FBgn0002526 | Length: | 3712 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_996816.3 | Gene: | USH2A / 7399 | HGNCID: | 12601 | Length: | 5202 | Species: | Homo sapiens |
Alignment Length: | 1596 | Identity: | 397/1596 - (24%) |
---|---|---|---|
Similarity: | 625/1596 - (39%) | Gaps: | 363/1596 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 9 GALLVILAISYCQAELTPPYFNLATGRKIYATATCGQDTDGPELYCKLVGANTEHDHIDYSVIQG 73
Fly 74 QVCDYCDPTVPERN---HPPENAID---GTEAWWQSPPLSRGMKFNE-VNLTINFEQ-EFHVAYL 130
Fly 131 FIRMGNSPRPGLWTLEKSTDYGKTWTPWQHFSDTPADCETYFGKDTYKPITRDDDVICTTEYSKI 195
Fly 196 VPLENGEIPVMLL----NERPSSTNYFNSTVLQEWTRATNVRIRLLRTKNLLGHLMSVARQDPTV 256
Fly 257 TRRYFYSIKDISIGGRCMCNGHADTCDVKDPKSPVRILACRCQHHTCGIQCNECCPGFEQKKWRQ 321
Fly 322 NTNARPFNCEPCNCHGHSNECKYDEEVNRKGLSLD--IHGHY-DGGGVCQNCQHNTVGINCNKCK 383
Fly 384 PKYYRPKGKHWNETDVCSPCQCDYFFSTGH------CEEETGNCECRAAFQPPSCDSCAYGYYGY 442
Fly 443 -----PNCRECECNLNGT--NGYHCEAESGQQCPCKINFAGAYCKQCAEGY-----YGFPECKAC 495
Fly 496 ECNKIGSITNDCNVTTGECKCLTNFGGDNCERCKHGYF--NYPTCSYCDCDNQGT-ESEICNKQS 557
Fly 558 GQCICREGFGGPRCDQCLPG-FY----NYPDCKPCNCSSTG--SSAITCD-NTGKCNCLNNFAGK 614
Fly 615 QCTLCTAGYY-----SYPDCLPCHCDSHGS-QGVSCNS-DGQCLCQPNFDGRQCDSCKEGFY--- 669
Fly 670 -NFPSCEDCNCDPAGVIDKFAGCGSVPVGELCKCKE-RVTGRICNECKPLYWNLNISNTEGCEIC 732
Fly 733 DCWTDGTISALDTCTSKSGQCPCKPHTQGRRCQECRDGTFDLDSASLFGCKDCSCDVGGSWQSVC 797
Fly 798 DKISGQCKCHPRITGLACTQPLTTHFFPTLHQFQYE-YEDGSLPSGTQVRYDY------DEAAFP 855
Fly 856 GFSSKGYVVFNAIQNDVRNEVNVFKSS----LYRIVLRYVNP-NAENVTATISVTSD--NPLEVD 913
Fly 914 QHVKVLLQPTSEPQFVTVAGPL----------GVKPSAIV--LDP-GRYVFTTKANKN----VML 961
Fly 962 DYFV---------LLPAAYYEAGILTRHI--SNPCELGN--------MELCRHYKYASVE---VF 1004
Fly 1005 ------SPAATPFVIGENSKPTNPVETYTDPEHLQIVSHVGDIPVLSGSQNELHY---IVDVPRS 1060
Fly 1061 GRYIFVIDYISDRN-------------FP-DSYYINLKLKDNPDSET--SVLLY----------- 1098
Fly 1099 ---PCLYSTICRTSVNEDGMEKSFYINKEDLQP---------------VIISADIEDGS------ 1139
Fly 1140 -----RFPI---ISVTAIPVDQWSIDYIN-PSPVCVIHDQQCATPKFRSVPDSKKIEFETDHEDR 1195
Fly 1196 IATNKPPYASLDERVKLVHLDSQNEATIVIESKVDATKPNLFVILVK------YYQPSHPKYQVY 1254
Fly 1255 YTLTAGKNQYDGKFD----IQHCPSS--------SGCRGVIRPAGEGSFEIDDEF---------K 1298
Fly 1299 FTITTDRSQSVWLDYLVVVP----LKQYNDDLLVEETFDQTKEFIQNCGHDHFHITHNASDFCKK 1359
Fly 1360 SVFSLTADYNSGALPCNCDYAGSTSFECHPF---GG 1392 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LanA | NP_476617.1 | LamNT | 18..271 | CDD:214532 | 57/264 (22%) |
EGF_Lam | 272..>314 | CDD:238012 | 18/41 (44%) | ||
EGF_Lam | 332..389 | CDD:238012 | 24/59 (41%) | ||
EGF_Lam | 402..443 | CDD:238012 | 13/51 (25%) | ||
EGF_Lam | 448..491 | CDD:238012 | 17/49 (35%) | ||
Laminin_EGF | 495..543 | CDD:278482 | 15/49 (31%) | ||
Laminin_EGF | 541..589 | CDD:278482 | 23/53 (43%) | ||
Laminin_EGF | 587..634 | CDD:278482 | 16/54 (30%) | ||
EGF_Lam | 631..673 | CDD:238012 | 22/47 (47%) | ||
Laminin_EGF | 677..729 | CDD:278482 | 14/52 (27%) | ||
Laminin_EGF | 732..782 | CDD:278482 | 16/49 (33%) | ||
EGF_Lam | 785..828 | CDD:238012 | 7/42 (17%) | ||
CBM6-CBM35-CBM36_like | 831..966 | CDD:271143 | 32/174 (18%) | ||
Laminin_EGF | 1375..1423 | CDD:278482 | 6/21 (29%) | ||
EGF_Lam | 1420..1457 | CDD:238012 | |||
Laminin_EGF | 1466..1516 | CDD:278482 | |||
Laminin_EGF | 1514..1562 | CDD:278482 | |||
LamB | 1632..1760 | CDD:214597 | |||
Laminin_EGF | <1775..1801 | CDD:278482 | |||
EGF_Lam | 1808..1851 | CDD:238012 | |||
EGF_Lam | 1859..1907 | CDD:214543 | |||
EGF_Lam | 1916..1968 | CDD:238012 | |||
EGF_Lam | 1969..2015 | CDD:238012 | |||
EGF_Lam | 2016..>2054 | CDD:238012 | |||
EGF_Lam | 2063..>2097 | CDD:238012 | |||
Laminin_I | 2129..2385 | CDD:283627 | |||
Tar | 2278..2662 | CDD:223910 | |||
Laminin_II | 2566..2700 | CDD:283628 | |||
LamG | 2674..2843 | CDD:238058 | |||
LamG | 2878..3029 | CDD:238058 | |||
LamG | 3078..3205 | CDD:214598 | |||
LamG | 3349..3512 | CDD:238058 | |||
LamG | 3535..3689 | CDD:238058 | |||
USH2A | NP_996816.3 | LamGL | 146..283 | CDD:214722 | |
Laminin_N | 291..516 | CDD:413488 | 61/273 (22%) | ||
EGF_Lam | 517..565 | CDD:238012 | 21/50 (42%) | ||
EGF_Lam | 574..639 | CDD:238012 | 28/71 (39%) | ||
Laminin_EGF | 641..691 | CDD:395007 | 12/52 (23%) | ||
EGF_Lam | 694..733 | CDD:214543 | 16/39 (41%) | ||
Laminin_EGF | 747..795 | CDD:395007 | 14/47 (30%) | ||
EGF_Lam | 794..844 | CDD:238012 | 20/49 (41%) | ||
EGF_Lam | 847..897 | CDD:214543 | 14/49 (29%) | ||
EGF_Lam | 900..948 | CDD:238012 | 22/47 (47%) | ||
EGF_Lam | 950..1000 | CDD:238012 | 14/54 (26%) | ||
EGF_Lam | 1001..>1037 | CDD:238012 | 13/37 (35%) | ||
fn3 | 1058..1132 | CDD:394996 | 16/80 (20%) | ||
fn3 | 1150..1227 | CDD:394996 | 19/91 (21%) | ||
FN3 | 1242..1357 | CDD:238020 | 26/133 (20%) | ||
FN3 | 1368..1451 | CDD:214495 | 17/87 (20%) | ||
LamG | 1519..1678 | CDD:238058 | 26/163 (16%) | ||
LamG | 1716..1868 | CDD:238058 | 8/25 (32%) | ||
FN3 | 1956..2051 | CDD:238020 | |||
FN3 | 2241..2313 | CDD:238020 | |||
FN3 | 2329..2428 | CDD:238020 | |||
FN3 | 2432..2528 | CDD:238020 | |||
FN3 | 2533..2619 | CDD:238020 | |||
FN3 | 2621..2719 | CDD:238020 | |||
FN3 | 2724..2799 | CDD:238020 | |||
FN3 | 2818..2920 | CDD:238020 | |||
FN3 | 2925..3015 | CDD:238020 | |||
FN3 | 3026..>3087 | CDD:238020 | |||
FN3 | <3449..3494 | CDD:238020 | |||
FN3 | 3503..3586 | CDD:238020 | |||
FN3 | 3590..3676 | CDD:238020 | |||
FN3 | 3680..3767 | CDD:238020 | |||
fn3 | 3777..3856 | CDD:394996 | |||
FN3 | 3866..3960 | CDD:238020 | |||
FN3 | 3964..4057 | CDD:238020 | |||
fn3 | 4161..4247 | CDD:394996 | |||
FN3 | 4268..4351 | CDD:238020 | |||
fn3 | 4357..4428 | CDD:394996 | |||
FN3 | 4444..4516 | CDD:238020 | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 4518..4541 | ||||
FN3 | 4529..4627 | CDD:238020 | |||
FN3 | 4636..4730 | CDD:238020 | |||
FN3 | 4826..4927 | CDD:238020 | |||
PDZ-binding | 5200..5202 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG1836 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |