DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LanA and ush2a

DIOPT Version :9

Sequence 1:NP_476617.1 Gene:LanA / 38723 FlyBaseID:FBgn0002526 Length:3712 Species:Drosophila melanogaster
Sequence 2:XP_009291422.1 Gene:ush2a / 568982 ZFINID:ZDB-GENE-060503-794 Length:5243 Species:Danio rerio


Alignment Length:1424 Identity:364/1424 - (25%)
Similarity:552/1424 - (38%) Gaps:406/1424 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 TGR--KIYATATCGQDTDGP------ELYCKLVGAN-TEHDHIDYSVIQGQVCDYCDPTVPERNH 88
            ||:  .:::.:||......|      |.||....|| |.|:.:..........||.:        
Zfish   302 TGQFPHLHSQSTCLCPASHPRVHPLVERYCIPNAANDTTHNKVLRLNQDAHPLDYIN-------- 358

  Fly    89 PPENAIDGTEAWWQS--PP---LSRGMKFNEVNLTINFEQ-EFHVAYLFIRMGNSPRPGLWTLEK 147
              :|.|..|  |..|  |.   |.:|     :.:||:.|. ::.|.|:.::..|: :|....:::
Zfish   359 --DNDIGTT--WISSIFPSIELLDKG-----ITITIDLENGQYQVFYVILQFLNA-QPEAVRIQR 413

  Fly   148 STDYGKTWTPWQHFSDTPADCETYFGKDTYKPITRDDDVICTTEYSKIVPLENGEIPVMLL---- 208
            .|.....|..||..:   .:| :|||.:....:.|.|.|.| .:....:|...|.|...:|    
Zfish   414 KTVGSSEWKDWQFLA---KNC-SYFGMEDNGALDRPDSVNC-LQLPSDIPYSRGNITFSMLTPEP 473

  Fly   209 NERPSSTNYFNSTVLQEWTRATNVRIRLLRTKNLLGHLMSVARQDPTVTRRY-FYSIKDISIGGR 272
            |.||...:::||..|||:.|||:|||:|....:         .||.||..|: :|::.:|:|.||
Zfish   474 NLRPGYNDFYNSAALQEFVRATHVRIQLHGQYH---------TQDATVPFRHRYYAVDEITISGR 529

  Fly   273 CMCNGHADTCDVKDPKSPVRILACRCQHHTCGIQCNECCPGFEQKKWRQNTNARPFNCEPCNCHG 337
            |.|:||||:||..  .||.| .||..:.||.|..|..|.|.|..|.:|.....:.|||.||.|:|
Zfish   530 CECHGHADSCDTS--VSPYR-CACLPESHTHGANCERCIPLFNDKPFRPGDQIQAFNCRPCQCYG 591

  Fly   338 HSNECKYDEEVNRKGLSLDIH--GHY-DGGGVCQNCQHNTVGINCNKCKPKYYRPKGKHWNETDV 399
            |::.|.|:.       |||.|  .|: .|||||.:|.|||.|.||.:|:..:||..|.....|||
Zfish   592 HASSCHYNS-------SLDPHPGEHFRGGGGVCDDCTHNTTGRNCERCRSLFYREVGALLWATDV 649

  Fly   400 CSPCQCDYFFSTGHCEEETGNCECRAAFQPPSCDSCAYGYYGYPNCRECECNLNGT--NGYHCEA 462
                                                         |:.|||:..||  ...|||.
Zfish   650 ---------------------------------------------CKACECHSAGTINASLHCEP 669

  Fly   463 ESGQQCPCKINFAGAYCKQCAEGYYGFPE-----CKACECNKIGSITND--CNVTTGECKCLTNF 520
            ..| ||.||.:.:|..|.||..|:|....     |:||.||..|::..|  |:..:|:|:|..|.
Zfish   670 IGG-QCKCKRHVSGRQCNQCQHGFYKLQSALADGCRACNCNTAGTVQPDITCHQDSGQCQCKANV 733

  Fly   521 GGDNCERCKHGY-----FNYPTCSYCDCDNQGTESEICNKQSGQCICREGFGGPRCDQCLPGFYN 580
            .|..|:||.:|:     .|...|..|.||..|:..:.||..:|||.|:.|..|..||.|:|.||:
Zfish   734 IGLTCDRCNYGFKFLNHTNPDGCISCGCDPWGSLHQFCNPFTGQCECKAGVRGLLCDTCIPHFYS 798

  Fly   581 YPD---CKPCNCSSTGS-SAITCDN-TGKCNCLNNFAGKQCTLCTAGYYSYP-----DCLPCHCD 635
            ...   |.|||||..|| ...:||. ||:|.|..:..|::|.:|..||:|..     .||||.||
Zfish   799 QNSSGVCLPCNCSLNGSVPGTSCDAVTGQCKCKPHTEGRRCDVCRDGYHSLDRSNSLGCLPCQCD 863

  Fly   636 SHGS---QGVSCNSDGQCLCQPNFDGRQCDSCKEGFYNFPS------CEDCNCD-----PAGVID 686
            ..|:   .||...:.|||||:.|.:..:|:.|....||..|      |:.|.||     ||.|.|
Zfish   864 LRGTVNGSGVCDKTTGQCLCKNNVESLRCNRCSAHTYNLSSANATHGCQPCYCDHIGTVPATVCD 928

  Fly   687 KFAGCGSVPVGELCKCKERVTGRICNECKPLYWNLNISNTEGCEICDCWTDGTISALDTCTSKSG 751
                    ||...|.|.....||.|..|||.:: |:.:....||:|:|.:.|.:.  ..|.:.||
Zfish   929 --------PVSGQCICLPTRYGRDCGTCKPGFF-LSEAGLSECEVCECHSVGAMG--QVCAAHSG 982

  Fly   752 QCPC-KPHTQGRRCQECRDGTFDLDSASLFGCKDCSCDVGGSWQSVCDKISGQCKCHPRITG--- 812
            ||.| .|...|.||.:|:|..|.. :.|:..|:.|.||..|.:...|...:|||.|.|.:||   
Zfish   983 QCVCAHPSLTGHRCDQCQDLFFGF-NPSVGRCEPCGCDPVGGFNGTCHPQTGQCLCKPFVTGDKC 1046

  Fly   813 ---------------LACTQ-------PLTTHFFPTLHQFQYEYEDG--------SLPSGTQV-- 845
                           |.|::       ||......|..:..:...|.        :|...||:  
Zfish  1047 DACVEGASFMDPNNYLGCSKDPQQQPPPLGRVLNSTTIELSWRTPDSPNSNALMYTLLRDTQIIH 1111

  Fly   846 ----RYDYDEAAFPGFSSKGYVVFN--AIQNDVRNEVNVFKSSLYRIVLRYVN--PNAENVTATI 902
                ::.:....|...:...|.:::  .|.:::|:..:   ||:  :.||.::  |..|.:..|:
Zfish  1112 VSHSQHPFGTMHFIDTALSPYTLYSYQLITSNIRSNTS---SSV--VTLRTLSAVPEQEELQLTL 1171

  Fly   903 ---------SVTSDNPLE----VDQHVKVLLQPTSEPQFVTVAGPLGVKPSAIVLDP-GRYVFTT 953
                     |.....||.    :|.:....:|..|..:.:...| |..:.:|..|.| .||.|:.
Zfish  1172 VGRAKPNSASFNWTEPLNTTGPIDNYTLSSIQDLSGEKRIYYTG-LQTEATAEELQPFTRYNFSL 1235

  Fly   954 KANKNVMLDYFVLLPAAYYEAGILTRHISNPCELGNMELCRHYKYASVEVFSPAATPFVIGENSK 1018
            ||                             |..|...........:.::               
Zfish  1236 KA-----------------------------CTDGGCARSESLVVQTAQI--------------- 1256

  Fly  1019 PTNPVETYTDPEHLQIVSHVGDIPVLSGSQNELHYIVDVPRSG---RYIFVIDYISD-------- 1072
               |.|....|:          |..|..||.::.:...|..:|   ||...:..:::        
Zfish  1257 ---PPEQQPAPK----------ITTLGSSQLKVDWEPPVLPNGIIIRYELFMQLLNELQRNASSY 1308

  Fly  1073 ----RNFPDSYYINLKLKDNPDSETSVLLYPCLYSTICRTSVNEDGM---EKSFYINKEDLQPVI 1130
                |.|..|.::|.:              |.|      :|.||:.:   |.:..::  :|||. 
Zfish  1309 GTEQRVFLSSGWLNPR--------------PSL------SSANENALTPPESTVVVS--NLQPF- 1350

  Fly  1131 ISADIEDGSRFPIISV--TAIPVDQWSI--------DYINPSPVCVIHDQQCATPKFRSVPDSKK 1185
                  ...||.:::|  ....:..|::        :|:.|..|..:..            .|.:
Zfish  1351 ------STYRFRVLTVNMAGSVLSDWAVGRTAEGVPEYMAPPQVSAVSS------------SSLR 1397

  Fly  1186 IEFETDHEDRIATNKPPYASLDERVKLVHLDSQNEATIVIESKVDATKPNLFVILVKYYQPSHPK 1250
            :.:||..:..:......|     ||.| |.:..:                         .|..|.
Zfish  1398 VSWETPRDKDVRGEVTEY-----RVNL-HQEQMS-------------------------NPYAPP 1431

  Fly  1251 Y--QVYYTLTAGKNQYDGKFDIQHCPSSSGCRGVIRPAGEGSFEIDDEFKFTITTDRSQ 1307
            .  ||.|:.:|.::.|..                      |..:..:|:.||:|....|
Zfish  1432 IVTQVLYSGSAQEHSYTA----------------------GGLKAYEEYSFTVTVCNRQ 1468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanANP_476617.1 LamNT 18..271 CDD:214532 68/257 (26%)
EGF_Lam 272..>314 CDD:238012 20/41 (49%)
EGF_Lam 332..389 CDD:238012 26/59 (44%)
EGF_Lam 402..443 CDD:238012 0/40 (0%)
EGF_Lam 448..491 CDD:238012 19/44 (43%)
Laminin_EGF 495..543 CDD:278482 18/54 (33%)
Laminin_EGF 541..589 CDD:278482 21/50 (42%)
Laminin_EGF 587..634 CDD:278482 22/53 (42%)
EGF_Lam 631..673 CDD:238012 17/44 (39%)
Laminin_EGF 677..729 CDD:278482 18/56 (32%)
Laminin_EGF 732..782 CDD:278482 17/50 (34%)
EGF_Lam 785..828 CDD:238012 17/67 (25%)
CBM6-CBM35-CBM36_like 831..966 CDD:271143 31/166 (19%)
Laminin_EGF 1375..1423 CDD:278482
EGF_Lam 1420..1457 CDD:238012
Laminin_EGF 1466..1516 CDD:278482
Laminin_EGF 1514..1562 CDD:278482
LamB 1632..1760 CDD:214597
Laminin_EGF <1775..1801 CDD:278482
EGF_Lam 1808..1851 CDD:238012
EGF_Lam 1859..1907 CDD:214543
EGF_Lam 1916..1968 CDD:238012
EGF_Lam 1969..2015 CDD:238012
EGF_Lam 2016..>2054 CDD:238012
EGF_Lam 2063..>2097 CDD:238012
Laminin_I 2129..2385 CDD:283627
Tar 2278..2662 CDD:223910
Laminin_II 2566..2700 CDD:283628
LamG 2674..2843 CDD:238058
LamG 2878..3029 CDD:238058
LamG 3078..3205 CDD:214598
LamG 3349..3512 CDD:238058
LamG 3535..3689 CDD:238058
ush2aXP_009291422.1 Laminin_G_3 160..297 CDD:290121
Laminin_N 307..528 CDD:295486 66/252 (26%)
EGF_Lam 529..577 CDD:238012 23/50 (46%)
EGF_Lam 586..638 CDD:238012 25/58 (43%)
Laminin_EGF 653..703 CDD:278482 19/50 (38%)
Laminin_EGF 706..756 CDD:278482 16/49 (33%)
EGF_Lam 759..797 CDD:214543 16/37 (43%)
Laminin_EGF 808..857 CDD:278482 18/48 (38%)
EGF_Lam 859..912 CDD:238012 18/52 (35%)
EGF_Lam 913..963 CDD:238012 18/58 (31%)
EGF_Lam 965..1014 CDD:238012 17/51 (33%)
EGF_Lam 1015..1064 CDD:238012 13/48 (27%)
FN3 1177..1253 CDD:238020 18/105 (17%)
FN3 1264..1375 CDD:238020 26/149 (17%)
FN3 1386..1469 CDD:214495 22/148 (15%)
LamG 1537..1699 CDD:238058
LamG 1737..1890 CDD:238058
FN3 1981..2071 CDD:238020
FN3 2163..2253 CDD:238020
FN3 2258..2341 CDD:238020
FN3 2352..2443 CDD:238020
FN3 2447..2544 CDD:238020
FN3 2547..2633 CDD:238020
FN3 2635..2733 CDD:238020
FN3 2743..2807 CDD:238020
FN3 2830..2932 CDD:238020
fn3 2939..3014 CDD:278470
FN3 3032..>3099 CDD:238020
FN3 3542..3611 CDD:238020
FN3 3615..3701 CDD:238020
fn3 3718..3784 CDD:278470
FN3 3801..3887 CDD:238020
FN3 3908..3971 CDD:238020
FN3 3996..4086 CDD:238020
FN3 4186..4284 CDD:238020
fn3 4288..4366 CDD:278470
FN3 4382..4465 CDD:238020
FN3 4470..4553 CDD:238020
FN3 4555..4653 CDD:238020
FN3 4679..4753 CDD:238020
fn3 4760..4830 CDD:278470
FN3 4864..4955 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 61 1.000 Domainoid score I10443
eggNOG 1 0.900 - - E1_KOG1836
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.