DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanA and Ntn4

DIOPT Version :10

Sequence 1:NP_476617.1 Gene:LanA / 38723 FlyBaseID:FBgn0002526 Length:3712 Species:Drosophila melanogaster
Sequence 2:NP_001100250.1 Gene:Ntn4 / 299737 RGDID:1565947 Length:630 Species:Rattus norvegicus


Alignment Length:604 Identity:170/604 - (28%)
Similarity:246/604 - (40%) Gaps:143/604 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 HGVASIGALLVILAISYCQAELTPPYFNLATGRKIYATATCGQDTDGPELYCKLVGANTEHDHID 67
            :||:.:.        |.|:....|...|||.|||:.|..||||  :..||:|      ...::.|
  Rat    21 NGVSGVN--------SRCEKACNPRMGNLALGRKLQADTTCGQ--NATELFC------FYSENAD 69

  Fly    68 YSVIQGQVCDYCDPTVPERNHPPENAIDGT----EAWWQSPPLSRGMKFNEVNLTINFEQEFHVA 128
            .:..|.: ||.|:.......|||....|.:    ..||||     ....:...:.::.|.||:..
  Rat    70 LTCRQPK-CDKCNGAHSHLAHPPSAMADSSFRFPRTWWQS-----AEDVHREKIQLDLEAEFYFT 128

  Fly   129 YLFIRMGNSPRPGLWTLEKSTDYGKTWTPWQHFSDTPADCETYFGKDTYKPITRDDDV-----IC 188
            :| |.:..||||....|::|.|:||||.|:::|:   .:|...||        .:|||     ||
  Rat   129 HL-IMVFKSPRPAAMVLDRSQDFGKTWKPYKYFA---TNCSATFG--------LEDDVVKKGAIC 181

  Fly   189 TTEYSKIVPLENGEIPVMLLNERPSSTNYFNSTVLQEWTRATNVRIRLLRTKNLLGHLMSVARQD 253
            |:.||...|...||:....|:......|.:::.| ||..:.||:|:|||:.::     ....|.|
  Rat   182 TSRYSNPFPCTGGEVIFRALSPPYDIENPYSAKV-QEQLKITNLRVRLLKRQS-----CPCQRND 240

  Fly   254 PTVTRRYF--YSIKDISIGGRCMCNGHADTCDVKDPKSPVRILA--------CRCQHHTCGIQCN 308
            ......:|  |:|.|..:.|.|.||||||.|...:...||:...        |.|:|:|.|..|.
  Rat   241 LNAKPHHFTHYAIYDFIVKGSCFCNGHADQCLPVEGFRPVKAPGAFHVVHGKCMCKHNTAGSHCQ 305

  Fly   309 ECCPGFEQKKWR--QNTNARPFNCEPCNCHGHSNECKYDEEV-----NRKGLSLDIHGHYDGGGV 366
            .|.|.:..:.|.  ......|..|..|.|:||::.|.:|..|     ||            .|||
  Rat   306 HCAPLYNDRPWEAADGRTGAPNECRTCKCNGHADTCHFDINVWEASGNR------------SGGV 358

  Fly   367 CQNCQHNTVGINCNKCKPKYYRPKGKHWNETDVCSPCQCD-------YFFSTGHCEEETGNCECR 424
            |.||||||.|.:|.:|||.:||...:.::..|.|..|.|.       .|.|...|:...|:|.|:
  Rat   359 CNNCQHNTEGQHCQRCKPGFYRDLRRPFSAPDACKACSCHPVGSAILPFSSVTFCDPSNGDCPCK 423

  Fly   425 AAFQPPSCDSCAYGYYGYPNCRECECNLNGTNGYHCEAESGQQCPCKINFAGAYCKQCAEGYYGF 489
            .....|.||.|..||:|:                                          |.|| 
  Rat   424 PGVAGPHCDRCMVGYWGF------------------------------------------GDYG- 445

  Fly   490 PECKACECNKIGSITNDCNVTTGECKCLTNFGGDNCERCK--HGYFNYPTCSYCDCDNQGTESEI 552
              |:.|:|      ...|:..||:| ..:|...|......  |...|.....:...|.||..:  
  Rat   446 --CRPCDC------AGSCDPLTGDC-ISSNADVDWYHEVPAFHSLHNKSEPGWEWEDEQGFSA-- 499

  Fly   553 CNKQSGQCICREG-FGGPR 570
             .:.||:|.|:|. .|.|:
  Rat   500 -LRHSGKCECKEQVLGNPK 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanANP_476617.1 LamNT 18..271 CDD:214532 79/263 (30%)
EGF_Lam 272..>314 CDD:238012 18/49 (37%)
EGF_Lam 332..389 CDD:238012 25/61 (41%)
EGF_Lam 402..443 CDD:238012 15/47 (32%)
Laminin_EGF 448..497 CDD:395007 5/48 (10%)
Laminin_EGF 495..543 CDD:395007 10/49 (20%)
Laminin_EGF 541..589 CDD:395007 10/31 (32%)
Laminin_EGF 587..634 CDD:395007
Laminin_EGF 632..679 CDD:395007
Laminin_EGF 677..729 CDD:395007
Laminin_EGF 732..782 CDD:395007
EGF_Lam 785..828 CDD:238012
CBM6-CBM35-CBM36_like 831..966 CDD:271143
Laminin_EGF 1375..1423 CDD:395007
EGF_Lam 1420..1457 CDD:238012
Laminin_EGF 1466..1516 CDD:395007
Laminin_EGF 1514..1562 CDD:395007
LamB 1632..1760 CDD:214597
Laminin_EGF <1775..1801 CDD:395007
EGF_Lam 1808..1851 CDD:238012
EGF_Lam 1859..1907 CDD:214543
EGF_Lam 1916..1968 CDD:238012
EGF_Lam 1969..2015 CDD:238012
EGF_Lam 2016..>2054 CDD:238012
EGF_Lam 2063..>2097 CDD:238012
Laminin_I 2134..2385 CDD:310534
SMC_prok_B 2356..>2705 CDD:274008
Laminin_II 2566..2700 CDD:368703
LamG 2674..2843 CDD:238058
LamG 2878..3029 CDD:238058
LamG 3078..3205 CDD:214598
LamG 3349..3512 CDD:238058
LamG 3535..3689 CDD:238058
Ntn4NP_001100250.1 Laminin_N 34..260 CDD:459653 77/257 (30%)
EGF_Lam 261..320 CDD:238012 19/58 (33%)
Laminin_EGF 332..392 CDD:395007 27/71 (38%)
EGF_Lam 395..446 CDD:214543 18/95 (19%)
NTR_netrin-4_like 517..626 CDD:239633 0/1 (0%)
Blue background indicates that the domain is not in the aligned region.

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