DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LanA and alp7

DIOPT Version :9

Sequence 1:NP_476617.1 Gene:LanA / 38723 FlyBaseID:FBgn0002526 Length:3712 Species:Drosophila melanogaster
Sequence 2:NP_594820.1 Gene:alp7 / 2543382 PomBaseID:SPAC890.02c Length:474 Species:Schizosaccharomyces pombe


Alignment Length:551 Identity:120/551 - (21%)
Similarity:207/551 - (37%) Gaps:166/551 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  2182 SELESDAKSYAKQVNQTLANAFDIRERSSTTLGNITVAYDEAVKSADQAKEAIASVEALSKNLEA 2246
            |::.|.:..|::            |..||:::|.     :|...:....|...||.|:|      
pombe     2 SDIVSSSTDYSR------------RSPSSSSIGT-----NETDHTGFHEKRQGASSESL------ 43

  Fly  2247 AASTKIDAALEQAQHILGQINGTSIELTPNEQVLEKARKLYEEVNTLVLPIKAQNKSLNALKNDI 2311
                     :..||.       :|.|..|       |.||:.::.:      ..|..|| ||:.:
pombe    44 ---------IPPAQR-------SSEESMP-------APKLFPKLTS------KPNPQLN-LKDTL 78

  Fly  2312 GE-FSDHLEDL-----FNWS-----------EASQAKSADVERR-------------------NV 2340
            .: .||.|:.|     |::|           ..||.|:.:.:.|                   |.
pombe    79 NKRVSDRLQALELNKSFDFSGTPRPMHPISHPLSQHKTPEFKHRKRNVESILTPKNPSLFSSSNA 143

  Fly  2341 ANQKAFDN---SKFDTVSEQKLQAEKNIKDAGNFLINGDL-------TLNQINQKLDNLRDALNE 2395
            |:|:...|   |.|.......||...:.:..  .|.||..       .||......||:|::...
pombe   144 ASQRGSLNTAPSNFAYSHSSSLQTSASSRPP--VLSNGSFPRQTNTAPLNPPVHLKDNIRNSATP 206

  Fly  2396 LNSFNKNVDEELPVREDQHKEADALTDQAEQKAAELAIKAQDLAAQYTDMTASAEPAIKAATAYS 2460
            ..| ..::..:.|:...|.:       ||:.:|.....||: ||..|.:::......:..    |
pombe   207 STS-QADIPTQYPINSTQKQ-------QAKYEAEIEGYKAK-LAGTYHEISVLQNTIVNV----S 258

  Fly  2461 GIVEAV-EAAQKLSQDAISAAGNATDKTDGIEERAHLADTGSTDLLQRAR-----------QSLQ 2513
            |.:.|| :..|:|.....|.:.:..|....:.| .|..:|.:   |||.:           :.::
pombe   259 GQLIAVNDQLQQLRSGKASTSPSTKDTNMRLVE-GHNEETLA---LQRGKYTQEEVDKLIQERME 319

  Fly  2514 KVQDDLEPRLNASAGKVQKISA--VNNATEHQ--LKDINKLIDQLPAESQRDMWKNSNANASDAL 2574
            ||.:||..:.  ||...|||:|  .|.|.:::  ::::...|...|     :..|.||:|..:..
pombe   320 KVAEDLHAQY--SAKHTQKINAFKANYARKYEATIQELQNQIGTAP-----NAPKISNSNWEEER 377

  Fly  2575 EILKNVLEILEPVSVQTPKELEKAHGINRDL---------DLTNKD---VSQANKQLDDVEGSVS 2627
            ..||...:.|:       |:||||....:|:         |:...|   :.|.::|..|:|....
pombe   378 RALKADNQTLQ-------KQLEKAIQERQDMSDFLNNFKADMAKSDKLLMQQQSQQTGDLETLRL 435

  Fly  2628 KLSELAEDIE-EQQHRVGSQSRQLGQEIENL 2657
            :|..|.|::. |::.|     :||.|..|:|
pombe   436 QLQALQEELRVEREER-----QQLIQMSEDL 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanANP_476617.1 LamNT 18..271 CDD:214532
EGF_Lam 272..>314 CDD:238012
EGF_Lam 332..389 CDD:238012
EGF_Lam 402..443 CDD:238012
EGF_Lam 448..491 CDD:238012
Laminin_EGF 495..543 CDD:278482
Laminin_EGF 541..589 CDD:278482
Laminin_EGF 587..634 CDD:278482
EGF_Lam 631..673 CDD:238012
Laminin_EGF 677..729 CDD:278482
Laminin_EGF 732..782 CDD:278482
EGF_Lam 785..828 CDD:238012
CBM6-CBM35-CBM36_like 831..966 CDD:271143
Laminin_EGF 1375..1423 CDD:278482
EGF_Lam 1420..1457 CDD:238012
Laminin_EGF 1466..1516 CDD:278482
Laminin_EGF 1514..1562 CDD:278482
LamB 1632..1760 CDD:214597
Laminin_EGF <1775..1801 CDD:278482
EGF_Lam 1808..1851 CDD:238012
EGF_Lam 1859..1907 CDD:214543
EGF_Lam 1916..1968 CDD:238012
EGF_Lam 1969..2015 CDD:238012
EGF_Lam 2016..>2054 CDD:238012
EGF_Lam 2063..>2097 CDD:238012
Laminin_I 2129..2385 CDD:283627 49/248 (20%)
Tar 2278..2662 CDD:223910 102/455 (22%)
Laminin_II 2566..2700 CDD:283628 28/105 (27%)
LamG 2674..2843 CDD:238058
LamG 2878..3029 CDD:238058
LamG 3078..3205 CDD:214598
LamG 3349..3512 CDD:238058
LamG 3535..3689 CDD:238058
alp7NP_594820.1 Kinetocho_Slk19 316..407 CDD:289479 27/104 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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