DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanA and lama1

DIOPT Version :9

Sequence 1:NP_476617.1 Gene:LanA / 38723 FlyBaseID:FBgn0002526 Length:3712 Species:Drosophila melanogaster
Sequence 2:XP_004915294.2 Gene:lama1 / 100488009 XenbaseID:XB-GENE-968308 Length:3101 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanANP_476617.1 LamNT 18..271 CDD:214532
EGF_Lam 272..>314 CDD:238012
EGF_Lam 332..389 CDD:238012
EGF_Lam 402..443 CDD:238012
EGF_Lam 448..491 CDD:238012
Laminin_EGF 495..543 CDD:278482
Laminin_EGF 541..589 CDD:278482
Laminin_EGF 587..634 CDD:278482
EGF_Lam 631..673 CDD:238012
Laminin_EGF 677..729 CDD:278482
Laminin_EGF 732..782 CDD:278482
EGF_Lam 785..828 CDD:238012
CBM6-CBM35-CBM36_like 831..966 CDD:271143
Laminin_EGF 1375..1423 CDD:278482
EGF_Lam 1420..1457 CDD:238012
Laminin_EGF 1466..1516 CDD:278482
Laminin_EGF 1514..1562 CDD:278482
LamB 1632..1760 CDD:214597
Laminin_EGF <1775..1801 CDD:278482
EGF_Lam 1808..1851 CDD:238012
EGF_Lam 1859..1907 CDD:214543
EGF_Lam 1916..1968 CDD:238012
EGF_Lam 1969..2015 CDD:238012
EGF_Lam 2016..>2054 CDD:238012
EGF_Lam 2063..>2097 CDD:238012
Laminin_I 2129..2385 CDD:283627
Tar 2278..2662 CDD:223910
Laminin_II 2566..2700 CDD:283628
LamG 2674..2843 CDD:238058
LamG 2878..3029 CDD:238058
LamG 3078..3205 CDD:214598
LamG 3349..3512 CDD:238058
LamG 3535..3689 CDD:238058
lama1XP_004915294.2 LamNT 16..268 CDD:214532
EGF_Lam 270..317 CDD:238012
Laminin_EGF 397..454 CDD:395007
Laminin_EGF 452..498 CDD:395007
Laminin_B 566..705 CDD:395006
EGF_Lam 739..787 CDD:238012
Laminin_EGF 789..844 CDD:395007
Laminin_EGF 847..891 CDD:395007
EGF_Lam 899..947 CDD:238012
EGF_Lam 949..993 CDD:214543
EGF_Lam 995..1039 CDD:238012
Laminin_EGF 1042..1090 CDD:395007
Laminin_EGF 1088..1145 CDD:395007
Laminin_B 1216..1358 CDD:395006
Laminin_EGF 1401..1447 CDD:395007
Laminin_EGF 1450..1504 CDD:395007
Laminin_EGF 1507..>1541 CDD:395007
Laminin_I 1575..1826 CDD:310534
Smc <1705..2078 CDD:224117
Laminin_II 2035..2145 CDD:368703
LamG 2141..2281 CDD:214598
LamG 2308..2465 CDD:238058
LamG 2490..2655 CDD:238058
Laminin_G_1 2770..2898 CDD:395008
LamG 2918..3071 CDD:238058
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 72 1.000 Domainoid score I9146
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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