DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanA and lamb3

DIOPT Version :9

Sequence 1:NP_476617.1 Gene:LanA / 38723 FlyBaseID:FBgn0002526 Length:3712 Species:Drosophila melanogaster
Sequence 2:XP_012826649.2 Gene:lamb3 / 100125073 XenbaseID:XB-GENE-983491 Length:1157 Species:Xenopus tropicalis


Alignment Length:619 Identity:197/619 - (31%)
Similarity:283/619 - (45%) Gaps:93/619 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LLVILAISYCQAELT-----PPYFNLATGRKIY--ATATCGQDTDGPELYCKLVGANTEHDHIDY 68
            |||:..:.:.|.:.:     |...:|..||..|  |::|||  .:.||.||.           .|
 Frog     7 LLVLPTLLHAQNDCSRGACYPAAGDLLIGRGNYLRASSTCG--IEKPETYCS-----------PY 58

  Fly    69 SVIQGQVCDYCDPTVP--ERNHPPENAID--GTEAWWQSPPLSRGMKFNEVNLTINFEQEFHVAY 129
            ..:|.:.| .||...|  |.:|...|.:.  |...||||   |.|:  |:|:|..:..::|.::.
 Frog    59 GEMQMKCC-RCDSRQPFTEISHRITNVLSPTGHLRWWQS---SNGI--NDVSLQFDLNKKFQLSD 117

  Fly   130 LFIRMGNSPRPGLWTLEKSTDYGKTWTPWQHFSDTPADCETYFGKDTYKPITRD-DDVICTTEYS 193
            :.:.. .||||....:|:|:|:||||..:|:.:   .||...| ....:.:..| .||.|...:.
 Frog   118 VILDF-RSPRPASMLIERSSDHGKTWQVYQYLA---YDCAASF-PHIRRGVPYDLQDVRCQELHG 177

  Fly   194 KIVPLENGEI---PVMLLNERPSSTNYFNSTVLQEWTRATNVRIRLLRTKNLLGHLMSVARQDPT 255
            .  |.:.|:|   |:.|....|.|    :|..:|.....||:|:          :...:.|..| 
 Frog   178 D--PTQGGKIRFSPMELAFSVPLS----HSQRVQHLADFTNLRL----------NFTQLVRLPP- 225

  Fly   256 VTRRY-----FYSIKDISIGGRCMCNGHADTC------DVKDPKSPVRIL-ACRCQHHTCGIQCN 308
              |||     |||:..:.:.|.|.|.||||.|      | :|....:::. .|.|||:|.|..|.
 Frog   226 --RRYREPSTFYSVDVMRVHGSCFCYGHADRCMPSGALD-RDHYGDIQVYDKCICQHNTVGENCE 287

  Fly   309 ECCPGFEQKKWRQNTNARPFNCEPCNCHGHSNECKYDEEVNRKGLSLDIHGHYDGGGVCQNCQHN 373
            .|...|....||...:..|..|..|||:.|:::|.:|..|      .:..|.. .||||.||:..
 Frog   288 RCADLFHDLPWRPADDNYPNECRRCNCNNHADKCHFDPAV------YEASGRV-SGGVCDNCRDG 345

  Fly   374 TVGINCNKCKPKYYRPKGKHWNETDVCSPCQCDYFFST--GHCEEETGNCECRAAFQPPSCDSCA 436
            |.|.||.:|:..|||...|..:..|.|..|.||...|.  |.|::.||.|.|:.......||.|.
 Frog   346 TTGRNCERCRSDYYRNPNKDMSHRDACISCDCDPEGSIDGGSCDDLTGRCNCKENVGGERCDQCK 410

  Fly   437 YGYY-----GYPNCRECECNLNG-TNGYHCEAESGQQCPCKINFAGAYCKQCAEGYYGFPE---C 492
            .|||     ....|.:|.||..| .....|::|:| ||.|..|..|..|.|||..::....   |
 Frog   411 PGYYLLSASNPQGCTKCTCNPQGMERDQPCDSETG-QCKCLPNVLGQRCDQCATNHWNLASGRGC 474

  Fly   493 KACECNKIGSITNDCNVTTGECKCLTNFGGDNCERC-KHGYFNYPT-CSYCDCDNQGTESEICNK 555
            :.|.|:...|.:..||..||:|.|...|||..|..| ...|.:..| |..|:||.|||..:.|:|
 Frog   475 ERCGCHPRNSYSLQCNQATGQCLCREGFGGRFCTECPDRMYGSLQTGCRACNCDFQGTLEQGCDK 539

  Fly   556 QSGQCICREGFGGPRCDQCLPGFYN-YPDCKPCN 588
            .:|:|:||.|..|.|||.|..|:.: :|.|:.|:
 Frog   540 ANGRCLCRPGITGVRCDSCQRGYSDPFPTCRACH 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanANP_476617.1 LamNT 18..271 CDD:214532 73/272 (27%)
EGF_Lam 272..>314 CDD:238012 17/48 (35%)
EGF_Lam 332..389 CDD:238012 21/56 (38%)
EGF_Lam 402..443 CDD:238012 16/47 (34%)
EGF_Lam 448..491 CDD:238012 16/43 (37%)
Laminin_EGF 495..543 CDD:278482 18/49 (37%)
Laminin_EGF 541..589 CDD:278482 22/49 (45%)
Laminin_EGF 587..634 CDD:278482 1/2 (50%)
EGF_Lam 631..673 CDD:238012
Laminin_EGF 677..729 CDD:278482
Laminin_EGF 732..782 CDD:278482
EGF_Lam 785..828 CDD:238012
CBM6-CBM35-CBM36_like 831..966 CDD:271143
Laminin_EGF 1375..1423 CDD:278482
EGF_Lam 1420..1457 CDD:238012
Laminin_EGF 1466..1516 CDD:278482
Laminin_EGF 1514..1562 CDD:278482
LamB 1632..1760 CDD:214597
Laminin_EGF <1775..1801 CDD:278482
EGF_Lam 1808..1851 CDD:238012
EGF_Lam 1859..1907 CDD:214543
EGF_Lam 1916..1968 CDD:238012
EGF_Lam 1969..2015 CDD:238012
EGF_Lam 2016..>2054 CDD:238012
EGF_Lam 2063..>2097 CDD:238012
Laminin_I 2129..2385 CDD:283627
Tar 2278..2662 CDD:223910
Laminin_II 2566..2700 CDD:283628
LamG 2674..2843 CDD:238058
LamG 2878..3029 CDD:238058
LamG 3078..3205 CDD:214598
LamG 3349..3512 CDD:238058
LamG 3535..3689 CDD:238058
lamb3XP_012826649.2 Laminin_N 26..244 CDD:395009 72/260 (28%)
EGF_Lam 245..302 CDD:238012 20/57 (35%)
EGF_Lam 311..369 CDD:238012 23/64 (36%)
Laminin_EGF 375..424 CDD:395007 16/48 (33%)
Laminin_EGF 427..474 CDD:395007 16/47 (34%)
Laminin_EGF 477..525 CDD:395007 17/47 (36%)
EGF_Lam 525..569 CDD:214543 20/43 (47%)
Smc <815..1149 CDD:224117
cc_LAMB_C 1087..1157 CDD:424069
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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