DRSC/TRiP Functional Genomics Resources

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Protein Alignment LanA and lamb3

DIOPT Version :10

Sequence 1:NP_476617.1 Gene:LanA / 38723 FlyBaseID:FBgn0002526 Length:3712 Species:Drosophila melanogaster
Sequence 2:XP_012826649.2 Gene:lamb3 / 100125073 XenbaseID:XB-GENE-983491 Length:1157 Species:Xenopus tropicalis


Alignment Length:619 Identity:197/619 - (31%)
Similarity:283/619 - (45%) Gaps:93/619 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LLVILAISYCQAELT-----PPYFNLATGRKIY--ATATCGQDTDGPELYCKLVGANTEHDHIDY 68
            |||:..:.:.|.:.:     |...:|..||..|  |::|||  .:.||.||.           .|
 Frog     7 LLVLPTLLHAQNDCSRGACYPAAGDLLIGRGNYLRASSTCG--IEKPETYCS-----------PY 58

  Fly    69 SVIQGQVCDYCDPTVP--ERNHPPENAID--GTEAWWQSPPLSRGMKFNEVNLTINFEQEFHVAY 129
            ..:|.:.| .||...|  |.:|...|.:.  |...||||   |.|:  |:|:|..:..::|.::.
 Frog    59 GEMQMKCC-RCDSRQPFTEISHRITNVLSPTGHLRWWQS---SNGI--NDVSLQFDLNKKFQLSD 117

  Fly   130 LFIRMGNSPRPGLWTLEKSTDYGKTWTPWQHFSDTPADCETYFGKDTYKPITRD-DDVICTTEYS 193
            :.:.. .||||....:|:|:|:||||..:|:.:   .||...| ....:.:..| .||.|...:.
 Frog   118 VILDF-RSPRPASMLIERSSDHGKTWQVYQYLA---YDCAASF-PHIRRGVPYDLQDVRCQELHG 177

  Fly   194 KIVPLENGEI---PVMLLNERPSSTNYFNSTVLQEWTRATNVRIRLLRTKNLLGHLMSVARQDPT 255
            .  |.:.|:|   |:.|....|.|    :|..:|.....||:|:          :...:.|..| 
 Frog   178 D--PTQGGKIRFSPMELAFSVPLS----HSQRVQHLADFTNLRL----------NFTQLVRLPP- 225

  Fly   256 VTRRY-----FYSIKDISIGGRCMCNGHADTC------DVKDPKSPVRIL-ACRCQHHTCGIQCN 308
              |||     |||:..:.:.|.|.|.||||.|      | :|....:::. .|.|||:|.|..|.
 Frog   226 --RRYREPSTFYSVDVMRVHGSCFCYGHADRCMPSGALD-RDHYGDIQVYDKCICQHNTVGENCE 287

  Fly   309 ECCPGFEQKKWRQNTNARPFNCEPCNCHGHSNECKYDEEVNRKGLSLDIHGHYDGGGVCQNCQHN 373
            .|...|....||...:..|..|..|||:.|:::|.:|..|      .:..|.. .||||.||:..
 Frog   288 RCADLFHDLPWRPADDNYPNECRRCNCNNHADKCHFDPAV------YEASGRV-SGGVCDNCRDG 345

  Fly   374 TVGINCNKCKPKYYRPKGKHWNETDVCSPCQCDYFFST--GHCEEETGNCECRAAFQPPSCDSCA 436
            |.|.||.:|:..|||...|..:..|.|..|.||...|.  |.|::.||.|.|:.......||.|.
 Frog   346 TTGRNCERCRSDYYRNPNKDMSHRDACISCDCDPEGSIDGGSCDDLTGRCNCKENVGGERCDQCK 410

  Fly   437 YGYY-----GYPNCRECECNLNG-TNGYHCEAESGQQCPCKINFAGAYCKQCAEGYYGFPE---C 492
            .|||     ....|.:|.||..| .....|::|:| ||.|..|..|..|.|||..::....   |
 Frog   411 PGYYLLSASNPQGCTKCTCNPQGMERDQPCDSETG-QCKCLPNVLGQRCDQCATNHWNLASGRGC 474

  Fly   493 KACECNKIGSITNDCNVTTGECKCLTNFGGDNCERC-KHGYFNYPT-CSYCDCDNQGTESEICNK 555
            :.|.|:...|.:..||..||:|.|...|||..|..| ...|.:..| |..|:||.|||..:.|:|
 Frog   475 ERCGCHPRNSYSLQCNQATGQCLCREGFGGRFCTECPDRMYGSLQTGCRACNCDFQGTLEQGCDK 539

  Fly   556 QSGQCICREGFGGPRCDQCLPGFYN-YPDCKPCN 588
            .:|:|:||.|..|.|||.|..|:.: :|.|:.|:
 Frog   540 ANGRCLCRPGITGVRCDSCQRGYSDPFPTCRACH 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LanANP_476617.1 LamNT 18..271 CDD:214532 73/272 (27%)
EGF_Lam 272..>314 CDD:238012 17/48 (35%)
EGF_Lam 332..389 CDD:238012 21/56 (38%)
EGF_Lam 402..443 CDD:238012 16/47 (34%)
Laminin_EGF 448..497 CDD:395007 18/52 (35%)
Laminin_EGF 495..543 CDD:395007 18/49 (37%)
Laminin_EGF 541..589 CDD:395007 22/49 (45%)
Laminin_EGF 587..634 CDD:395007 1/2 (50%)
Laminin_EGF 632..679 CDD:395007
Laminin_EGF 677..729 CDD:395007
Laminin_EGF 732..782 CDD:395007
EGF_Lam 785..828 CDD:238012
CBM6-CBM35-CBM36_like 831..966 CDD:271143
Laminin_EGF 1375..1423 CDD:395007
EGF_Lam 1420..1457 CDD:238012
Laminin_EGF 1466..1516 CDD:395007
Laminin_EGF 1514..1562 CDD:395007
LamB 1632..1760 CDD:214597
Laminin_EGF <1775..1801 CDD:395007
EGF_Lam 1808..1851 CDD:238012
EGF_Lam 1859..1907 CDD:214543
EGF_Lam 1916..1968 CDD:238012
EGF_Lam 1969..2015 CDD:238012
EGF_Lam 2016..>2054 CDD:238012
EGF_Lam 2063..>2097 CDD:238012
Laminin_I 2134..2385 CDD:310534
SMC_prok_B 2356..>2705 CDD:274008
Laminin_II 2566..2700 CDD:368703
LamG 2674..2843 CDD:238058
LamG 2878..3029 CDD:238058
LamG 3078..3205 CDD:214598
LamG 3349..3512 CDD:238058
LamG 3535..3689 CDD:238058
lamb3XP_012826649.2 Laminin_N 25..244 CDD:459653 72/261 (28%)
EGF_Lam 245..302 CDD:238012 20/57 (35%)
EGF_Lam 311..369 CDD:238012 23/64 (36%)
Laminin_EGF 375..424 CDD:395007 16/48 (33%)
Laminin_EGF 427..474 CDD:395007 16/47 (34%)
Laminin_EGF 477..525 CDD:395007 17/47 (36%)
EGF_Lam 525..569 CDD:214543 20/43 (47%)
SMC_N <844..1148 CDD:481474
cc_LAMB3_C 1087..1157 CDD:411974
Blue background indicates that the domain is not in the aligned region.

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