Sequence 1: | NP_476617.1 | Gene: | LanA / 38723 | FlyBaseID: | FBgn0002526 | Length: | 3712 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001090659.1 | Gene: | lamc1 / 100036631 | XenbaseID: | XB-GENE-478553 | Length: | 1592 | Species: | Xenopus tropicalis |
Alignment Length: | 2812 | Identity: | 563/2812 - (20%) |
---|---|---|---|
Similarity: | 831/2812 - (29%) | Gaps: | 1357/2812 - (48%) |
- Green bases have known domain annotations that are detailed below.
Fly 6 ASIGALLVIL-------AISYCQAE-----LTPPYFNLATGRKIYATATCGQDTDGPELYCKLVG 58
Fly 59 ANTEHDHIDYSVIQG--QVCDYCDPTVPERNHPPENAIDGTE----AWWQSPPLSRGMKF-NEVN 116
Fly 117 LTINFEQEFHVAYLFIRMGNSPRPGLWTLEKSTDYGKTWTPWQHFSDTPADCETYFGKDTYKPIT 181
Fly 182 R--------DDDVICTTEYSKIVPLENGEIPVMLLNERPSSTNYFNSTVLQEWTRATNVRIRLLR 238
Fly 239 TKNLLGHLMSVARQDPTVTRRYFYSIKDISIGGRCMCNGHADTCDVKDPKSPVRILACRCQHHTC 303
Fly 304 GIQCNECCPGFEQKKWRQNTNARPFNCEPCNCHGHSNECKYDEEVNRKGLSLDIHGHYDGGGVCQ 368
Fly 369 NCQHNTVGINCNKCKPKYYRPKGKHWNETDVCSPCQCDYFFSTGHCEEETGNCECRAAFQPPSCD 433
Fly 434 SCAYGYYGYPNCRECECNLNGTNGYHCEAESGQQCPCKINFAGAYCKQCAEGYYGFPECKACECN 498
Fly 499 KIGSITNDCNVTTGECKCLTNFGGDNCERCKHGYFNYPTCSYCDCDNQGTESEICNKQSGQCICR 563
Fly 564 EGFGGPRCDQCLPGFYNYPDCKPCNCSSTGSSAITCDNTGKCNCLNNFAGKQCTLCTAGYYSYPD 628
Fly 629 CLPCHCDSHGSQGVSCNSDGQCLCQPNFDGRQCDSCKEGFYNFPSCEDCNCDPAGVIDKFAGCGS 693
Fly 694 VPVGELCKCKERVTGRICNECKPLYWNLNISNTEGCEICDCWTDGTISALDTCTSKSGQCPCKPH 758
Fly 759 TQGRRCQECRDGTFDLDSASLFGCKDCSCDVGGSWQSVCDKISGQCKCHPRITGLACTQPLTTHF 823
Fly 824 FPTLHQFQYEYEDGSLPSGTQVRYDYDEAAFPGFSSKGYVVFNAIQNDVRNEVNVFKSSLYRIVL 888
Fly 889 RYVNPNAENVTATISVTSDNPLEVDQHVKVLLQPTSEPQFVTVAGPLGVKPSAIVLDPGRYVFTT 953
Fly 954 KANKNVMLDYFVLLPAAYYEAGILTRHISNPCELGNMELCRHYKYASVEVFSPAATPFVIGENSK 1018
Fly 1019 PTNPVETYTDPEHLQIVSHVGDIPVLSGSQNELHYIVDVPRSGRYIFVIDYISDRNFPDSYYINL 1083
Fly 1084 KLKDNPDSETSVLLYPCLYSTICRTSVNEDGMEKSFYINKEDLQPVIISADIEDGSRFPIISVTA 1148
Fly 1149 IPVDQWSIDYINPSPVCVIHDQQCATPKFRSVPDSKKIEFETDHEDRIATNKPPYASLDERVKLV 1213
Fly 1214 HLDSQNEATIVIESKVDATKPNLFVILVKYYQPSHPKYQVYYTLTAGKNQYDGKFDIQHCPSSSG 1278
Fly 1279 CRGVIRPAGEGSFEIDDEFKFTITTDRSQSVWLDYLVVVPLKQYNDDLLVEETFDQTKEFIQNCG 1343
Fly 1344 HDHFHITHNASDFCKKSVFSLTADYNSGALPCNCDYAGSTSFECHPFGGQCQCKPNVIERTCGAC 1408
Fly 1409 RSRYYGFPDCKPCKCPNSAMCEPTTGECMCPPNVIGDLCEKCAPNTYGFHQVIGCEECACNPMGI 1473
Fly 1474 ANGNSQCDLFNGTCECRQNIEGRACDVCSNGYFNFPHCEQCSCHKPGTELEVCDKIDGACFCKKN 1538
Fly 1539 VVGRDCDQCVDGTYNLQESNPDGCTTCFCFGKTSRCDSAYLRVYNVSLLKHVSITTPEFHEESIK 1603
Fly 1604 FDMWPVPADEILLNETTLKADFTLREVNDERPAYFGVLDYLLNQNNHISAYGGDLAYTLHFTSGF 1668
Fly 1669 DGKYIVAPDVILFSEHNALVHTSYEQPSRNEPFTNRVNIVESNFQTISGKPVSRADFMMVLRDLK 1733
Fly 1734 VIFIRANYWEQTLVTHLSDVYLTLADEDADGTGEYQFLAVERCSCPPGYSGHSCEDCAPGYYRD- 1797
Fly 1798 PS-GPYGGYCIPCECNGHSETCDCATGICSKCQHGTEGDHCERCVSGYYGNATNGTPGDCMICAC 1861
Fly 1862 PLPFDSNNFATSCEISESGDQIHC-ECKPGYTGPRCESCANGFYGEPESIGQ-----VCKPCECS 1920
Fly 1921 GNINPEDQGSCDTRTGECLRCLNNTFGAACNLCAPGFYGDAI----KLKNCQSCDCDDLGT---- 1977
Fly 1978 QTCDPFVGVCTCHENVIGDRCDRCKPDHYGFESGVGCRACDC-GAASNSTQCDPHTGHCACKSGV 2041
Fly 2042 TGRQCDRCAVDHWKYEKDGCTPCNCNQGYSRGFGCNPNTGKCQCLPGVIGDRCDACPNRWVLIKD 2106
Fly 2107 -EGCQECNNCHHALLDVTDRMRYQIDSVLEDFNSVTLAFFTSQKLNYYDQLADELEPKVKLLDPN 2170
Fly 2171 SVDLSPSKKANSELESDAKSYAKQVNQTLANAFDIRERSSTTLG-------NITVAYDEAVKSAD 2228
Fly 2229 QAKEAIASVEALSKNLEAAASTKIDAA---LEQAQHILGQINGTSIELT--PNEQVL--EKARKL 2286
Fly 2287 YE----EVNTLVLPIKAQNKSLN-ALKNDIGEFSDHLEDLFNWSEASQAKSA-DVERRNVANQKA 2345
Fly 2346 FDNSKFDTVSEQKLQAEK---NIKDAGN--FLINGDLT------LNQINQKLDNLRDALNELNSF 2399
Fly 2400 NKNVDEEL----PVREDQH------------------------KEADALTDQAE----------Q 2426
Fly 2427 KAAELAIKAQDLAAQYTDMTASAEPAIKAATAYSGIVEAVEAAQKLSQDAISAAGNATDKTDGIE 2491
Fly 2492 ERAHLADTGSTDLLQRARQSLQKVQDDLEPRLNASAGKVQKISAVNNATEHQLKDINKLIDQLPA 2556
Fly 2557 ESQRDM-------WKNSNANASDALEILKNVLEILEPVSVQTPKELEKAHGINRDLDLTNKDVSQ 2614
Fly 2615 ---ANKQLDDVEGSV------SKLSELAEDIEEQQHRVGSQSRQLGQ---EIENLKAQVEAARQL 2667
Fly 2668 ANSIKVGVNFKPSTILE 2684 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LanA | NP_476617.1 | LamNT | 18..271 | CDD:214532 | 80/272 (29%) |
EGF_Lam | 272..>314 | CDD:238012 | 16/41 (39%) | ||
EGF_Lam | 332..389 | CDD:238012 | 25/56 (45%) | ||
EGF_Lam | 402..443 | CDD:238012 | 0/40 (0%) | ||
EGF_Lam | 448..491 | CDD:238012 | 0/42 (0%) | ||
Laminin_EGF | 495..543 | CDD:278482 | 8/47 (17%) | ||
Laminin_EGF | 541..589 | CDD:278482 | 11/47 (23%) | ||
Laminin_EGF | 587..634 | CDD:278482 | 3/46 (7%) | ||
EGF_Lam | 631..673 | CDD:238012 | 0/41 (0%) | ||
Laminin_EGF | 677..729 | CDD:278482 | 5/51 (10%) | ||
Laminin_EGF | 732..782 | CDD:278482 | 14/49 (29%) | ||
EGF_Lam | 785..828 | CDD:238012 | 8/42 (19%) | ||
CBM6-CBM35-CBM36_like | 831..966 | CDD:271143 | 5/134 (4%) | ||
Laminin_EGF | 1375..1423 | CDD:278482 | 0/47 (0%) | ||
EGF_Lam | 1420..1457 | CDD:238012 | 0/36 (0%) | ||
Laminin_EGF | 1466..1516 | CDD:278482 | 6/49 (12%) | ||
Laminin_EGF | 1514..1562 | CDD:278482 | 0/47 (0%) | ||
LamB | 1632..1760 | CDD:214597 | 18/127 (14%) | ||
Laminin_EGF | <1775..1801 | CDD:278482 | 17/27 (63%) | ||
EGF_Lam | 1808..1851 | CDD:238012 | 26/42 (62%) | ||
EGF_Lam | 1859..1907 | CDD:214543 | 16/48 (33%) | ||
EGF_Lam | 1916..1968 | CDD:238012 | 27/55 (49%) | ||
EGF_Lam | 1969..2015 | CDD:238012 | 16/49 (33%) | ||
EGF_Lam | 2016..>2054 | CDD:238012 | 17/38 (45%) | ||
EGF_Lam | 2063..>2097 | CDD:238012 | 13/33 (39%) | ||
Laminin_I | 2129..2385 | CDD:283627 | 71/286 (25%) | ||
Tar | 2278..2662 | CDD:223910 | 106/459 (23%) | ||
Laminin_II | 2566..2700 | CDD:283628 | 31/131 (24%) | ||
LamG | 2674..2843 | CDD:238058 | 4/11 (36%) | ||
LamG | 2878..3029 | CDD:238058 | |||
LamG | 3078..3205 | CDD:214598 | |||
LamG | 3349..3512 | CDD:238058 | |||
LamG | 3535..3689 | CDD:238058 | |||
lamc1 | NP_001090659.1 | LamNT | 27..267 | CDD:214532 | 79/267 (30%) |
EGF_Lam | 268..313 | CDD:238012 | 17/48 (35%) | ||
Laminin_EGF | 325..381 | CDD:278482 | 28/161 (17%) | ||
Laminin_EGF | 381..428 | CDD:278482 | 23/181 (13%) | ||
Laminin_EGF | 428..475 | CDD:278482 | 19/104 (18%) | ||
Laminin_B | 541..662 | CDD:278481 | 46/682 (7%) | ||
Laminin_EGF | 707..753 | CDD:278482 | 27/46 (59%) | ||
EGF_Lam | 755..803 | CDD:238012 | 18/56 (32%) | ||
Laminin_EGF | 811..855 | CDD:278482 | 25/43 (58%) | ||
EGF_Lam | 866..916 | CDD:238012 | 16/49 (33%) | ||
EGF_Lam | 918..963 | CDD:214543 | 18/44 (41%) | ||
EGF_Lam | 965..1012 | CDD:238012 | 15/47 (32%) | ||
Domain II and I. /evidence=ECO:0000250 | 1013..1592 | 155/662 (23%) | |||
SPX | <1017..1073 | CDD:271919 | 16/73 (22%) | ||
COG1340 | 1023..1322 | CDD:224259 | 82/351 (23%) | ||
ATP-synt_B | <1100..1229 | CDD:304375 | 39/156 (25%) | ||
COG1340 | 1259..1546 | CDD:224259 | 65/311 (21%) | ||
DUF3829 | 1347..1571 | CDD:289644 | 55/245 (22%) | ||
ATP-synt_B | <1376..1479 | CDD:304375 | 24/111 (22%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1456..1489 | 11/37 (30%) | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 76 | 1.000 | Domainoid score | I8809 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |