DRSC/TRiP Functional Genomics Resources

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Protein Alignment D19A and znf1004

DIOPT Version :9

Sequence 1:NP_477304.1 Gene:D19A / 38718 FlyBaseID:FBgn0022935 Length:845 Species:Drosophila melanogaster
Sequence 2:NP_001107936.1 Gene:znf1004 / 799653 ZFINID:ZDB-GENE-080219-20 Length:934 Species:Danio rerio


Alignment Length:917 Identity:224/917 - (24%)
Similarity:334/917 - (36%) Gaps:191/917 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 CRICLNHLQNDAAYDLYLVPGLSKKLCFCTSL--SVEQNDGFPKNL----------CTLC----- 60
            |..|...|...::.::::.....::...||..  |..|:.....::          ||.|     
Zfish    64 CSQCGKSLGRKSSLEIHMRIHTGERPYTCTQCGKSFRQSSSLTLHMTIHTGERPYTCTQCGKSFM 128

  Fly    61 -YTKLNE---LHDFQK-----QCVDSVQKFQDLVAS----------NVFACQSSFDVFDP----- 101
             .:.||.   :|..:|     ||..|..:..||.|.          :...|..||.....     
Zfish   129 NSSNLNNHRLIHTGKKTHKCDQCGKSFLRAADLKAHFRVHTKVKPYSCSVCGKSFSTESHLRGHQ 193

  Fly   102 --NVAVQDYPAE--EEDHVNYDPLLNHKMELIENEEDVFKMLEHVDKEAEEVEKEAKVEEDDGGN 162
              :..|::|...  |:..::...|..|:|  |...|..:| ..|.||....:|.:...|....|.
Zfish   194 KIHTGVKEYMCFECEKTFISAHHLKRHQM--IHTGEKPYK-CSHCDKRFNRLESQKSHETIHTGE 255

  Fly   163 VSVKMFDDDSSIESGNDNDHDLDFEPNSSDDDIPLAQRMRGPATGSGPQQDRFSNLDKPKPRPRG 227
            .|.|....|.....         .|...|.:.|           .:|.:..:.|:.||   |.|.
Zfish   256 KSYKCSHCDKRFNR---------LESQKSHETI-----------HTGEKSYKCSHCDK---RFRQ 297

  Fly   228 -RPKKI--------KPPPPEEEELSDSSSESDDSEDGTSRGDKPKR-----KR------IPIEER 272
             |.:||        ||......|.:..:..|..:.:....|:||.:     ||      :.:.||
Zfish   298 LRHQKIHERIHTGTKPYKCSHCEKTFGNLGSVKTHEMIHTGEKPYKCSHCDKRFSQLGTMKLHER 362

  Fly   273 HLH---RIIDCHICHQKFKKAIRYEEHMKYHNDLLPFQCKVETCKKGFTTANGLRIHIDHAHTEL 334
             :|   :...|..|.:........|.||:.|....|:.|  ..|.|.||.::.|:.|: ..||. 
Zfish   363 -IHTGEKAYTCTQCGKSLGCKSALETHMRIHTGEKPYTC--TQCGKSFTQSSNLKKHM-LIHTG- 422

  Fly   335 SEVHACIAEGCGKTFPRVRLLTFHMKKVH----------------------GITKAAAPLRDFPC 377
            .:.|.|  :.|||||.....|..|: :||                      |..|....::::.|
Zfish   423 KKTHKC--DQCGKTFLTASYLKLHL-RVHTKEKPYSCSVCGKSFSTELGLRGHQKIHTGVKEYMC 484

  Fly   378 TECDTVFRCPTALKKHMYKHTGEELPYPCNICGKRFVINSALRDHLMRHAGIKNHVCPYCGVGKT 442
            .|||..|.....||:|...||||: ||.|:.|.|||....:.:.|.|.|.|.|::.|.:|....:
Zfish   485 FECDKTFLGAQQLKRHKRIHTGEK-PYKCSHCDKRFNRLESQKSHEMIHTGEKSYKCSHCDKRFS 548

  Fly   443 TRQEWNAHILTHTKEKKFKCRQCDHASHNKQALSNHVKVVHEKRKDFACQYCGKTFGKSHACKVH 507
            ..|....|...||.||.:||..|.........:..|.: :|...|.:.|..|||::|:|.:...|
Zfish   549 QLQNQKIHERIHTGEKPYKCLHCGKRFSQLGNMKLHER-IHTGEKPYTCTQCGKSYGRSASLNNH 612

  Fly   508 ERSHTGEKCCECKICGKIFLCEKSLTKHLK--THEKRDLPPAEPLRQQLNIPMPGQMSVPMPGQM 570
            ...|||:|..:|..|||.||....|..||:  |:||..|           .|:.|:.........
Zfish   613 MLIHTGKKTHKCDQCGKSFLAATRLKTHLRFHTNEKPYL-----------CPVCGKRFAQKAYLS 666

  Fly   571 PMQMQTDGLVPMDPNQMPSEDMLKACGGGTAAVPPKPKNSRRVQRVDISQLAGTAVNPIPSVSVP 635
            ..|....|:         .|.|...|          .|...|..::...|...|...|       
Zfish   667 EHQKTHTGV---------KEYMCFEC----------DKTFLRAHQLKWHQTIHTGEKP------- 705

  Fly   636 SWSPQVNFTKKEGQHICPGCGRGFNNIGNMKLHYKIIHEKVKDFACRFCPKRFSKAQILRHHEWI 700
                          :.|..|.:.||.:.....|.: ||...|.:.|..|.||||....|:.||.|
Zfish   706 --------------YKCSHCDKRFNRLERQTTHER-IHTGEKPYKCSHCGKRFSMLAHLKTHETI 755

  Fly   701 HTGEKPFECKICGKHFRQETALKKHIKTHEKPNRRHVPERSAPTQITFRKLEPDAEPRNFDQ-YQ 764
            ||||||:.|..|||.|.|.:.|.:|::.|... :.|..::...|..|...|:........:: |.
Zfish   756 HTGEKPYTCTRCGKSFAQSSNLYRHMRIHTGV-KTHKCDQCGKTFSTASCLKIHLRSHTKEKPYS 819

  Fly   765 DPAVERAAAT-AELLAHQLEENEAKRKA--EIERQKIAAAACEQLTKLQQQQEIIKATTSYDGYY 826
            .....::.:| :.|..||......|...  |.|:..|:||      ||::.|.|......|...:
Zfish   820 CTVCGKSFSTQSSLRLHQKIHTGLKEYMCFECEKTFISAA------KLKRHQMIHTGEKPYKCSH 878

  Fly   827 AQKAQSE 833
            ..|..||
Zfish   879 CNKRFSE 885

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
D19ANP_477304.1 zf-AD 12..83 CDD:214871 17/95 (18%)
C2H2 Zn finger 343..362 CDD:275368 7/18 (39%)
C2H2 Zn finger 377..397 CDD:275368 8/19 (42%)
zf-H2C2_2 389..414 CDD:290200 13/24 (54%)
C2H2 Zn finger 406..426 CDD:275368 7/19 (37%)
C2H2 Zn finger 434..454 CDD:275368 4/19 (21%)
C2H2 Zn finger 462..483 CDD:275368 3/20 (15%)
C2H2 Zn finger 491..511 CDD:275368 7/19 (37%)
C2H2 Zn finger 519..539 CDD:275368 9/21 (43%)
C2H2 Zn finger 652..673 CDD:275368 5/20 (25%)
C2H2 Zn finger 681..701 CDD:275368 9/19 (47%)
zf-H2C2_2 694..718 CDD:290200 15/23 (65%)
C2H2 Zn finger 709..729 CDD:275368 8/19 (42%)
tolA_full 724..>814 CDD:274303 19/93 (20%)
znf1004NP_001107936.1 C2H2 Zn finger 64..84 CDD:275368 3/19 (16%)
zf-H2C2_2 76..101 CDD:290200 3/24 (13%)
COG5048 88..502 CDD:227381 99/447 (22%)
C2H2 Zn finger 92..112 CDD:275368 4/19 (21%)
C2H2 Zn finger 120..140 CDD:275368 5/19 (26%)
C2H2 Zn finger 148..168 CDD:275368 6/19 (32%)
C2H2 Zn finger 176..196 CDD:275368 3/19 (16%)
C2H2 Zn finger 204..224 CDD:275368 4/21 (19%)
zf-H2C2_2 216..241 CDD:290200 9/27 (33%)
C2H2 Zn finger 232..252 CDD:275368 5/19 (26%)
C2H2 Zn finger 260..280 CDD:275368 4/39 (10%)
C2H2 Zn finger 288..308 CDD:275368 8/22 (36%)
C2H2 Zn finger 316..336 CDD:275368 2/19 (11%)
C2H2 Zn finger 344..364 CDD:275368 4/20 (20%)
C2H2 Zn finger 372..392 CDD:275368 5/19 (26%)
zf-H2C2_2 384..409 CDD:290200 9/26 (35%)
C2H2 Zn finger 400..420 CDD:275368 7/22 (32%)
C2H2 Zn finger 428..448 CDD:275368 8/22 (36%)
C2H2 Zn finger 456..476 CDD:275368 2/19 (11%)
COG5048 480..864 CDD:227381 124/444 (28%)
C2H2 Zn finger 484..504 CDD:275368 8/19 (42%)
zf-H2C2_2 497..521 CDD:290200 14/24 (58%)
C2H2 Zn finger 512..532 CDD:275368 7/19 (37%)
C2H2 Zn finger 540..560 CDD:275368 4/19 (21%)
C2H2 Zn finger 568..588 CDD:275368 3/20 (15%)
C2H2 Zn finger 596..616 CDD:275368 7/19 (37%)
C2H2 Zn finger 624..644 CDD:275368 9/19 (47%)
C2H2 Zn finger 652..672 CDD:275368 3/19 (16%)
C2H2 Zn finger 680..700 CDD:275368 4/29 (14%)
C2H2 Zn finger 708..728 CDD:275368 5/20 (25%)
C2H2 Zn finger 736..756 CDD:275368 9/19 (47%)
C2H2 Zn finger 764..784 CDD:275368 8/19 (42%)
zf-H2C2_2 776..801 CDD:290200 5/25 (20%)
C2H2 Zn finger 792..812 CDD:275368 3/19 (16%)
C2H2 Zn finger 820..840 CDD:275368 4/19 (21%)
C2H2 Zn finger 848..868 CDD:275368 8/25 (32%)
C2H2 Zn finger 876..896 CDD:275368 3/10 (30%)
zf-H2C2_2 888..913 CDD:290200
C2H2 Zn finger 904..924 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

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