DRSC/TRiP Functional Genomics Resources

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Protein Alignment D19A and ranshi

DIOPT Version :10

Sequence 1:NP_477304.1 Gene:D19A / 38718 FlyBaseID:FBgn0022935 Length:845 Species:Drosophila melanogaster
Sequence 2:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster


Alignment Length:577 Identity:108/577 - (18%)
Similarity:180/577 - (31%) Gaps:265/577 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EGRQYSIHSLCRICLNHLQNDAAYDLY------------LVPGLSKKLCFCTSLSVEQNDGFPKN 55
            ||:      :||.|......:.:.:::            |:.|...|.|          ...|..
  Fly     2 EGK------VCRTCGKRTNAERSLNIFEKRNQTTLEHIKLLTGAVLKNC----------STLPNR 50

  Fly    56 LCTLCYTKLNELHDFQKQCVDSVQKFQDLVASN-----VFACQSS-----------FDVFDPNVA 104
            ||..|.|.|.:...|:::|:: ||:  :|:.|.     :..||.|           .|:.:.::.
  Fly    51 LCASCQTCLQQAISFRERCLE-VQR--ELLHSQDDEDFLRICQESPKSVLEQEELELDLAEISIE 112

  Fly   105 VQDYPAEEEDHVNYDPLLNHKMELIENEEDVFKMLEHVDKEAEEVEKEAKVEEDDGGNVSVKMFD 169
            |     |..|.:|..|:          :...||:        |::..|:|:.||           
  Fly   113 V-----ERLDDLNEGPI----------QSSGFKV--------EDILNESKINED----------- 143

  Fly   170 DDSSIESGNDNDHDLDFEPNSSDDDIPLAQRMRGPATGSGPQQDRFSNLDKPKPRPRGRPKKIKP 234
                             ||| ::|||.                  :|.:|               
  Fly   144 -----------------EPN-NEDDID------------------YSEMD--------------- 157

  Fly   235 PPPEEEELSDSSSESDDSEDGTSRGDKPKRKRIPIEERHLHRIIDCHICHQKFKKAIRYEEHMKY 299
                 ..:.:|.:|.|..::..|..:.||::|.....|..:|...|..|....|..|.:..|.|.
  Fly   158 -----YLIYESDTEVDAKQELKSDSENPKKRRNRRNPRDSNRTFFCEECGNHIKDRISFILHCKR 217

  Fly   300 HNDLLPFQCKVETCKKGFTTANGLRIHIDHAHTELSEVHACIAEGCGKTFPRVRLLTFHMKKVHG 364
            |..                                                              
  Fly   218 HRG-------------------------------------------------------------- 220

  Fly   365 ITKAAAPLRDFPCTECDTVFRCPTALKKHMYKHTGEELPYPCNICGKRFVINSALRDHLMRHAGI 429
                   :::|.|..|:..|..|..||:|:.|||||: |:.|..|.:.|      .|:       
  Fly   221 -------VKEFGCEFCEDRFCTPAELKRHIRKHTGEK-PFKCRHCSRSF------SDY------- 264

  Fly   430 KNHVCPYCGVGKTTRQEWNAHILTHTKEKKFKCRQCDHASHNKQALSNHVKVVHEKRKDFACQYC 494
                        :||.:   |..|||.|:.|.|::|::|......|.||:.|             
  Fly   265 ------------STRLK---HERTHTNERPFVCKECNNAFTTSYILKNHMLV------------- 301

  Fly   495 GKTFGKSHACKVHERSHTGEKCCECKICGKIFLCEKSLTKHLKTH-EKRDLPPAEPL 550
                            |||||...|.:|.|:|.....||.|.::: .:|::..|:.:
  Fly   302 ----------------HTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRRNMQKADTI 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
D19ANP_477304.1 zf-AD 12..83 CDD:214871 17/82 (21%)
SFP1 <291..363 CDD:227516 4/71 (6%)
C2H2 Zn finger 343..362 CDD:275368 0/18 (0%)
C2H2 Zn finger 377..397 CDD:275368 7/19 (37%)
zf-H2C2_2 389..414 CDD:463886 11/24 (46%)
C2H2 Zn finger 406..426 CDD:275368 4/19 (21%)
C2H2 Zn finger 434..454 CDD:275368 3/19 (16%)
C2H2 Zn finger 462..483 CDD:275368 7/20 (35%)
C2H2 Zn finger 491..511 CDD:275368 0/19 (0%)
C2H2 Zn finger 519..539 CDD:275368 7/19 (37%)
C2H2 Zn finger 652..673 CDD:275368
C2H2 Zn finger 681..701 CDD:275368
zf-C2H2 707..729 CDD:395048
C2H2 Zn finger 709..729 CDD:275368
ranshiNP_649824.1 zf-AD 5..76 CDD:462262 17/83 (20%)
C2H2 Zn finger 198..218 CDD:275368 6/19 (32%)
COG5048 222..>276 CDD:227381 23/82 (28%)
C2H2 Zn finger 226..246 CDD:275368 7/19 (37%)
zf-H2C2_2 238..262 CDD:463886 12/30 (40%)
C2H2 Zn finger 254..274 CDD:275368 7/47 (15%)
C2H2 Zn finger 282..302 CDD:275368 7/48 (15%)
zf-H2C2_2 295..319 CDD:463886 13/52 (25%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
Blue background indicates that the domain is not in the aligned region.

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