DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment D19A and Plagl1

DIOPT Version :9

Sequence 1:NP_477304.1 Gene:D19A / 38718 FlyBaseID:FBgn0022935 Length:845 Species:Drosophila melanogaster
Sequence 2:NP_036892.1 Gene:Plagl1 / 25157 RGDID:3014 Length:583 Species:Rattus norvegicus


Alignment Length:601 Identity:123/601 - (20%)
Similarity:220/601 - (36%) Gaps:158/601 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   303 LLPFQCKVETCKKGFTTANGLRIHIDHAHTELSEVHACIAEGCGKTFPRVRLLTFHMKKVHGITK 367
            :.||:|  :.|.|.|.|.....|| :::||. .....|....|||.|.....|..|| ..|    
  Rat     1 MAPFRC--QKCGKSFLTLEKFTIH-NYSHTR-ERPFKCSKTECGKAFVSKYKLMRHM-ATH---- 56

  Fly   368 AAAPLRDFPCTECDTVFRCPTALKKHMYKHTGEELPYPCNICGKRFVINSALRDHLMRHAGIKNH 432
              :|.:...||.|:..|.....||.|:..|...::.|.|..|||::......:.|:..|:.....
  Rat    57 --SPQKTHQCTHCEKTFNRKDHLKNHLQTHDPNKMIYACEDCGKKYHTMLGYKRHMALHSASSGD 119

  Fly   433 V-CPYCGVGKTTRQEWNAHILTHT--------KEKKFKCRQCDHASHNKQALSNHVKVVHEKRKD 488
            : |..|.:...:.:....|:.:|.        :|||.:|..|:...:.::.:..|: |||...||
  Rat   120 LTCGVCTLELGSTEVLLDHLKSHAEEKAHHAPREKKHQCDHCERCFYTRKDVRRHL-VVHTGCKD 183

  Fly   489 FACQYCGKTFG-KSHACKVHERSHTGEKCCECKICGKIFLCEKSLTKHLKTHEKRDLPPAEPLRQ 552
            |.||:|.:.|| |.|..:..:::|:.|            |.::||  ....::....|.|.|.:.
  Rat   184 FLCQFCAQRFGRKDHLTRHTKKTHSQE------------LMQESL--QAGEYQGGYQPIAPPFQI 234

  Fly   553 QLNIPMPGQMSVP----MPGQMPMQMQTDGLVPMDPNQMPSEDMLKACGGGTAAVPPKPKNSRRV 613
            :.:...|.|:.:|    :.|.:|.::.  |||...|.::| :.||     ....:.|.|:....:
  Rat   235 KADPMPPFQLEMPPESGLDGGLPPEIH--GLVLASPEEVP-QPML-----SMPPMQPMPEQPFTL 291

  Fly   614 QRVDISQ------LAGTAVNPIPSVSVPSWSPQVNFTKKEGQHICPGCGRGFNNIGNMKLHYKII 672
            ....:..      |.....:|:|:    |::|.|:...|...       :||.|:|         
  Rat   292 HPGVVPSSPPPIILQEHKYSPVPT----SFAPFVSMPMKADL-------KGFCNMG--------- 336

  Fly   673 HEKVKDFACRFC--PKRFSK---------AQILRHHE----------------------W----- 699
              ..::|..:.|  |.:||:         .::....|                      |     
  Rat   337 --LFEEFPLQECQSPVKFSQCFEMAKEGFGKVTLPKELLVDAVNIAIPGSLEISSLLGFWQLPPP 399

  Fly   700 ------------IHTGEKPFECKICGKHFRQ------------------ETALKKHIKTHEKPNR 734
                        :..|| |...:|.....:|                  :..|....:...:|..
  Rat   400 PPQNGFMNGTIPVGAGE-PLPHRITCLAQQQPPPLLPPPPPLPLPEPLPQPQLPPQFQLQLQPQP 463

  Fly   735 RHVPE-RSAPTQITFRKLEPDAEPRNFDQYQDPAVERAAATAELLAHQLEENEAKRKAEIERQKI 798
            :..|: :..|.|:...:|.|..:|   :...:|..|.         .:.||.|.:.:.|||.::.
  Rat   464 QMQPQMQLQPLQLQLPQLLPQLQP---EPEPEPEPEE---------EEEEEEEIEEEEEIEEEEE 516

  Fly   799 AAAACEQLTKLQQQQE 814
            |....|:..:.:.::|
  Rat   517 AEPEAEEEEEAEDEEE 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
D19ANP_477304.1 zf-AD 12..83 CDD:214871
C2H2 Zn finger 343..362 CDD:275368 7/18 (39%)
C2H2 Zn finger 377..397 CDD:275368 7/19 (37%)
zf-H2C2_2 389..414 CDD:290200 9/24 (38%)
C2H2 Zn finger 406..426 CDD:275368 5/19 (26%)
C2H2 Zn finger 434..454 CDD:275368 3/19 (16%)
C2H2 Zn finger 462..483 CDD:275368 4/20 (20%)
C2H2 Zn finger 491..511 CDD:275368 7/20 (35%)
C2H2 Zn finger 519..539 CDD:275368 3/19 (16%)
C2H2 Zn finger 652..673 CDD:275368 4/20 (20%)
C2H2 Zn finger 681..701 CDD:275368 6/69 (9%)
zf-H2C2_2 694..718 CDD:290200 6/62 (10%)
C2H2 Zn finger 709..729 CDD:275368 3/37 (8%)
tolA_full 724..>814 CDD:274303 17/90 (19%)
Plagl1NP_036892.1 C2H2 Zn finger 6..26 CDD:275368 7/22 (32%)
C2H2 Zn finger 34..56 CDD:275368 8/22 (36%)
zf-H2C2_2 49..73 CDD:290200 9/30 (30%)
C2H2 Zn finger 64..84 CDD:275368 7/19 (37%)
C2H2 Zn finger 93..113 CDD:275368 5/19 (26%)
C2H2 Zn finger 122..142 CDD:275368 3/19 (16%)
C2H2 Zn finger 158..178 CDD:275368 4/20 (20%)
C2H2 Zn finger 186..207 CDD:275368 7/20 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.