DRSC/TRiP Functional Genomics Resources

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Protein Alignment D19B and ranshi

DIOPT Version :9

Sequence 1:NP_477297.1 Gene:D19B / 38717 FlyBaseID:FBgn0022699 Length:774 Species:Drosophila melanogaster
Sequence 2:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster


Alignment Length:523 Identity:107/523 - (20%)
Similarity:176/523 - (33%) Gaps:205/523 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VCRTCLSTVDDSAAYDLF--RVPGLAKKLCVCTSLSVEQADGFPKNLCNVCFSKLNDLHDFQKQC 74
            |||||....:...:.::|  |.....:.:.:.|...::.....|..||..|.:.|.....|:::|
  Fly     5 VCRTCGKRTNAERSLNIFEKRNQTTLEHIKLLTGAVLKNCSTLPNRLCASCQTCLQQAISFRERC 69

  Fly    75 VDSVQKFQDLVASN-----AFACQTN------FDVLDTSAAVADLPGEEEDNVHFDPLLNS--KI 126
            :: ||:  :|:.|.     ...||.:      .:.|:...|...:..|..|:::..|:.:|  |:
  Fly    70 LE-VQR--ELLHSQDDEDFLRICQESPKSVLEQEELELDLAEISIEVERLDDLNEGPIQSSGFKV 131

  Fly   127 EIIENEEDVFKMLESVEKEVEEVEMEMEQPFGRVSQDDSFESGNDNDLDADFQISSDDDIPLAQR 191
            |.|.||..:.:...:.|.:::..||:..          .:||  |.::||..::.||.:.|..:|
  Fly   132 EDILNESKINEDEPNNEDDIDYSEMDYL----------IYES--DTEVDAKQELKSDSENPKKRR 184

  Fly   192 SRRGATRGSKAKGKPKSAAKRQEEESEESEETSSSDDSDGNPKDKPKRKRIPATERDRHRLIDCH 256
            :||                                     ||             ||.:|...|.
  Fly   185 NRR-------------------------------------NP-------------RDSNRTFFCE 199

  Fly   257 ICHQKFKKAIRYEEHMKHHNDLLPFQCTVESCRKGFTTANGLRVHVEHAHTETSAMHPCTYEGCN 321
            .|....|..|.:..|.|.|..:                                           
  Fly   200 ECGNHIKDRISFILHCKRHRGV------------------------------------------- 221

  Fly   322 KSFARPVLLSFHMKRVHKVDTPQRDFPCTECEKVFRCPTALKKHMYKHTGEELPFACEICGKRFP 386
                                   ::|.|..||..|..|..||:|:.|||||: ||.|..|.:.| 
  Fly   222 -----------------------KEFGCEFCEDRFCTPAELKRHIRKHTGEK-PFKCRHCSRSF- 261

  Fly   387 INSVLRDHLLRHAGIKNHVCPYCGVGKTTRQEWNKHILTHTKEKKYECRQCDHASHNKQALANHV 451
                 .|:                   :||.   ||..|||.|:.:.|::|::|......|.||:
  Fly   262 -----SDY-------------------STRL---KHERTHTNERPFVCKECNNAFTTSYILKNHM 299

  Fly   452 KVVHEKRKDFACQYCGKTFGKSHACKIHERSHTGEKCCECKICGKVFLFEKGLTKHLKTH-EKRD 515
            .|                             |||||...|.:|.|:|.....||.|.::: .:|:
  Fly   300 LV-----------------------------HTGEKAFRCDLCDKLFSRYTHLTTHYRSNAHRRN 335

  Fly   516 LPK 518
            :.|
  Fly   336 MQK 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
D19BNP_477297.1 zf-AD 12..83 CDD:214871 17/72 (24%)
C2H2 Zn finger 255..275 CDD:275368 6/19 (32%)
C2H2 Zn finger 283..335 CDD:275368 0/51 (0%)
C2H2 Zn finger 318..338 CDD:275368 0/19 (0%)
COG5048 <347..512 CDD:227381 47/165 (28%)
C2H2 Zn finger 349..369 CDD:275368 8/19 (42%)
C2H2 Zn finger 378..398 CDD:275368 4/19 (21%)
C2H2 Zn finger 406..426 CDD:275368 4/19 (21%)
C2H2 Zn finger 434..455 CDD:275368 7/20 (35%)
C2H2 Zn finger 463..483 CDD:275368 0/19 (0%)
C2H2 Zn finger 491..511 CDD:275368 7/19 (37%)
C2H2 Zn finger 586..607 CDD:275368
C2H2 Zn finger 615..635 CDD:275368
zf-H2C2_2 627..652 CDD:290200
C2H2 Zn finger 643..663 CDD:275368
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 17/74 (23%)
C2H2 Zn finger 198..218 CDD:275368 6/19 (32%)
COG5048 222..>276 CDD:227381 26/82 (32%)
C2H2 Zn finger 226..246 CDD:275368 8/19 (42%)
zf-H2C2_2 238..262 CDD:290200 13/30 (43%)
C2H2 Zn finger 254..274 CDD:275368 8/47 (17%)
zf-H2C2_2 269..291 CDD:290200 9/21 (43%)
C2H2 Zn finger 282..302 CDD:275368 7/48 (15%)
zf-H2C2_2 295..319 CDD:290200 13/52 (25%)
C2H2 Zn finger 310..328 CDD:275368 7/17 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24388
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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