DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment D19B and prg

DIOPT Version :9

Sequence 1:NP_477297.1 Gene:D19B / 38717 FlyBaseID:FBgn0022699 Length:774 Species:Drosophila melanogaster
Sequence 2:NP_001260253.1 Gene:prg / 34177 FlyBaseID:FBgn0285971 Length:558 Species:Drosophila melanogaster


Alignment Length:725 Identity:147/725 - (20%)
Similarity:244/725 - (33%) Gaps:220/725 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 TVCRTC--------LSTVDDSAAY--DLFRVPGLAKKLCVCTSLSVEQADGFPKNLCNVCFSKLN 65
            :.||.|        |:..||:..:  |: .:..::|.|   .|:..::.:...:.:|:.|...|.
  Fly    15 STCRLCHHNTDPNSLNIFDDTVQFCKDV-SIAEVSKSL---WSVQYDRNECLSELICSRCLEILE 75

  Fly    66 DLHDFQKQCVDSVQKFQDLVASNAFACQTNFDVLDTSAAVADLPGEEEDNVHFDPLLNSKIEIIE 130
            :..:.:|...:..|..|:                       .|....:|:....|.||....:..
  Fly    76 EAFELRKGMQEREQSLQE-----------------------QLKEMIKDHPKHRPGLNGNPGVFV 117

  Fly   131 NEEDVFKMLESVEKEVEEVEMEMEQPFGRVSQDDSFESGNDNDLDADFQISSDDDIPLAQRSRRG 195
            .||...    .||.:.|.:....|:.|. :..|..:|:.:|:|                      
  Fly   118 PEEGCI----IVEVDPENLAESSEEEFA-LGSDGEYENYDDDD---------------------- 155

  Fly   196 ATRGSKAKGKPKSAAKRQEEESEESEETSSSDDSDGNPKDKPKRKRIPATERDRHRLIDCHICHQ 260
                              |||.|:.:|....|..:|...|.|               :.......
  Fly   156 ------------------EEEEEDYDEEDEEDGQNGEDVDMP---------------LGMDAAQM 187

  Fly   261 KFKKAIRYEEHMKHHNDLLPFQCTVESCRKGFTTANGLRVHVEHAHTETSAMHPCTYEGCN-KSF 324
            ..::::....:.........|.|  :.|..|||.....:.|...|| :.:|.:.|.:  || |..
  Fly   188 AAQQSVANNANTTEARPKRAFLC--QYCDLGFTLPAECQEHELAAH-DPNAPYCCNF--CNIKLV 247

  Fly   325 ARPVLLSFHMKRVHKVDTPQRDFPCTECEKVFRCPTALKKHMYKHTGEELPFACEICGKRFPINS 389
            .||.|:| |:|.:|   .|.|.:.|..|.|.|...:.||||...|||.. ||.|.:|.|.|..|:
  Fly   248 TRPALIS-HIKTLH---DPDRPYVCAHCRKGFVRRSDLKKHTIVHTGVR-PFTCNVCSKSFSRNT 307

  Fly   390 VLRDHLLRHAGIKNHVCPYCGVGKTTRQEWNKHILTHTKEKKYECRQCDHASHNKQALANHVKVV 454
            .|..|:..|:|:|..||..|.....|..|..:|..:|.:.|.::|.:|.::...:..|..|.:| 
  Fly   308 NLTKHMRIHSGVKPFVCQQCPRSFQTAVEMMRHTRSHGEVKAFQCGRCPYSFSRRDKLIAHQQV- 371

  Fly   455 HEKRKDFACQYCGKTFGKSHACKIHERSHTGEKCCECKICGKVFLFEKGLTKHLKTHEKRDLPKT 519
                                                                    |.:||:.:.
  Fly   372 --------------------------------------------------------HTRRDMEQQ 380

  Fly   520 QGTNALMGDGASGSSTIAKPSPHLRGRVERVDIAQLAGTVANPIPSVNLPSWSPQVNFTKKEGQH 584
            |....:               |.:.|     |:.|.|           |.:.......||....:
  Fly   381 QQMGLI---------------PPMEG-----DLQQQA-----------LQAKQKAAAQTKNSRYY 414

  Fly   585 ICPDCGKGFNHVSNMKLHYKVVHQKVKDFCCRFCPKRFAKKQYLRHHEYIHTGEKPYECKVCGKH 649
            .|..|.:.|....:::.| :.:|.. ..|.|:.|.:.|.:::.|:.||....|.. :.|.:|...
  Fly   415 HCDVCDRTFQRERDLQRH-QALHMD-SLFACKTCNQGFNRREQLQRHELEAHGPS-FTCGICCIS 476

  Fly   650 FRQEQVLKTHMKVHDKPPRPPGKPKEPA---------GPKAESSTAVKRQQPKNFEQYQDPAAER 705
            |..:..|:.|:|||....:...:.:|.|         .|.|.::..|           |||...|
  Fly   477 FLHQIELENHLKVHQLQHKMAQRAQEAAILPLKMAEKAPVAMTAPLV-----------QDPQLVR 530

  Fly   706 AAATAELLAY 715
            .:| |||..|
  Fly   531 PSA-AELSFY 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
D19BNP_477297.1 zf-AD 12..83 CDD:214871 15/80 (19%)
C2H2 Zn finger 255..275 CDD:275368 0/19 (0%)
C2H2 Zn finger 283..335 CDD:275368 18/52 (35%)
C2H2 Zn finger 318..338 CDD:275368 9/20 (45%)
COG5048 <347..512 CDD:227381 36/164 (22%)
C2H2 Zn finger 349..369 CDD:275368 8/19 (42%)
C2H2 Zn finger 378..398 CDD:275368 7/19 (37%)
C2H2 Zn finger 406..426 CDD:275368 5/19 (26%)
C2H2 Zn finger 434..455 CDD:275368 5/20 (25%)
C2H2 Zn finger 463..483 CDD:275368 0/19 (0%)
C2H2 Zn finger 491..511 CDD:275368 0/19 (0%)
C2H2 Zn finger 586..607 CDD:275368 4/20 (20%)
C2H2 Zn finger 615..635 CDD:275368 6/19 (32%)
zf-H2C2_2 627..652 CDD:290200 7/24 (29%)
C2H2 Zn finger 643..663 CDD:275368 6/19 (32%)
prgNP_001260253.1 zf-AD 16..94 CDD:285071 16/104 (15%)
COG5048 <212..340 CDD:227381 49/135 (36%)
C2H2 Zn finger 239..260 CDD:275368 10/23 (43%)
C2H2 Zn finger 268..288 CDD:275368 8/19 (42%)
zf-H2C2_2 280..305 CDD:290200 13/25 (52%)
zf-C2H2 294..316 CDD:278523 8/21 (38%)
C2H2 Zn finger 296..316 CDD:275368 7/19 (37%)
zf-H2C2_2 308..331 CDD:290200 8/22 (36%)
C2H2 Zn finger 324..344 CDD:275368 5/19 (26%)
C2H2 Zn finger 352..372 CDD:275368 5/76 (7%)
C2H2 Zn finger 416..436 CDD:275368 4/20 (20%)
C2H2 Zn finger 443..464 CDD:275368 6/20 (30%)
C2H2 Zn finger 470..490 CDD:275368 6/19 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24388
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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