DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10274 and ranshi

DIOPT Version :9

Sequence 1:NP_001097525.1 Gene:CG10274 / 38716 FlyBaseID:FBgn0035690 Length:863 Species:Drosophila melanogaster
Sequence 2:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster


Alignment Length:561 Identity:119/561 - (21%)
Similarity:169/561 - (30%) Gaps:235/561 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 VCRICLNRLPENGGGAGSFDLF------------LIPGLAKKLCVCTSLAVEQSDGFPKCLCAQC 67
            |||.|..|.    ....|.::|            |:.|...|.|          ...|..|||.|
  Fly     5 VCRTCGKRT----NAERSLNIFEKRNQTTLEHIKLLTGAVLKNC----------STLPNRLCASC 55

  Fly    68 FSRLDDMHEFQKLCVDSVQKFQDMVARNVFCPPASAQMKNFDLLNVAGNEPELVGQDEEDRINFD 132
            .:.|.....|::.|:: ||:                     :||:         .||:||.:.. 
  Fly    56 QTCLQQAISFRERCLE-VQR---------------------ELLH---------SQDDEDFLRI- 88

  Fly   133 PLLDHKMEMIENEEDVFKMLEHVDKEAEQVEKEVKQDELDAADLMTIFAAESSEESEEDIDQDVD 197
                       .:|....:||..:.|.:..|..::.:.||..:...|   :||....|||..:..
  Fly    89 -----------CQESPKSVLEQEELELDLAEISIEVERLDDLNEGPI---QSSGFKVEDILNESK 139

  Fly   198 FEPNSSDGDDDVPLAQRLRDNSRMIPKAKAAVIKEEDQEFPTGSEEEDEDGEKSKSRRKRIPPGE 262
            ...:..:.:||:       |.|.|     ..:|.|.|.|. ...:|...|.|..|.||.|..|  
  Fly   140 INEDEPNNEDDI-------DYSEM-----DYLIYESDTEV-DAKQELKSDSENPKKRRNRRNP-- 189

  Fly   263 RHLHRIIDCHICHQKFKKAIRYEEHMKHHNDLLPFQCKVETCRKGFTTAGGLRLHIDHAHTELSE 327
            |..:|...|..|....|..|.:..|.|.|..:                                 
  Fly   190 RDSNRTFFCEECGNHIKDRISFILHCKRHRGV--------------------------------- 221

  Fly   328 VHSCNVDGCGKTFPRIRLLTFHMKKMHGITKAAAPPRDYPCTECEKVFRCPMALKKHMYKHDGKE 392
                                                :::.|..||..|..|..||:|:.||.| |
  Fly   222 ------------------------------------KEFGCEFCEDRFCTPAELKRHIRKHTG-E 249

  Fly   393 LPFPCNICGKRFVINSALKDHLMRHAGIKNYVCPYCGVGKTTRQEWNTHILTHTQEKKFKCHICE 457
            .||.|..|.:.|                .:|         :||.:   |..|||.|:.|      
  Fly   250 KPFKCRHCSRSF----------------SDY---------STRLK---HERTHTNERPF------ 280

  Fly   458 HASHNKQSLANHIKIVHEKIKNYACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYPKS 522
                                   .|:.|...|..|:..|.|.:.|||||...|.:|.|.|    |
  Fly   281 -----------------------VCKECNNAFTTSYILKNHMLVHTGEKAFRCDLCDKLF----S 318

  Fly   523 LTKHLKTHEKRVLRAIETYR----QRQVEMGETPGEQFDNP 559
            ...||.||          ||    :|.::..:|   .||.|
  Fly   319 RYTHLTTH----------YRSNAHRRNMQKADT---IFDKP 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10274NP_001097525.1 zf-AD 15..90 CDD:214871 21/86 (24%)
C2H2 Zn finger 334..353 CDD:275368 0/18 (0%)
C2H2 Zn finger 368..388 CDD:275368 8/19 (42%)
COG5048 394..729 CDD:227381 41/170 (24%)
C2H2 Zn finger 397..417 CDD:275368 3/19 (16%)
C2H2 Zn finger 425..445 CDD:275368 3/19 (16%)
C2H2 Zn finger 453..474 CDD:275368 0/20 (0%)
C2H2 Zn finger 482..502 CDD:275368 6/19 (32%)
C2H2 Zn finger 510..530 CDD:275368 7/19 (37%)
C2H2 Zn finger 638..659 CDD:275368
C2H2 Zn finger 667..687 CDD:275368
zf-H2C2_2 680..704 CDD:290200
C2H2 Zn finger 695..715 CDD:275368
ranshiNP_649824.1 zf-AD 5..77 CDD:214871 21/107 (20%)
C2H2 Zn finger 198..218 CDD:275368 6/19 (32%)
COG5048 222..>276 CDD:227381 23/82 (28%)
C2H2 Zn finger 226..246 CDD:275368 8/19 (42%)
zf-H2C2_2 238..262 CDD:290200 12/40 (30%)
C2H2 Zn finger 254..274 CDD:275368 7/47 (15%)
zf-H2C2_2 269..291 CDD:290200 9/53 (17%)
C2H2 Zn finger 282..302 CDD:275368 6/19 (32%)
zf-H2C2_2 295..319 CDD:290200 11/27 (41%)
C2H2 Zn finger 310..328 CDD:275368 9/31 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24388
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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