DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7376 and brm

DIOPT Version :9

Sequence 1:NP_001261471.1 Gene:CG7376 / 38715 FlyBaseID:FBgn0035689 Length:1270 Species:Drosophila melanogaster
Sequence 2:NP_001261906.1 Gene:brm / 39744 FlyBaseID:FBgn0000212 Length:1658 Species:Drosophila melanogaster


Alignment Length:980 Identity:198/980 - (20%)
Similarity:321/980 - (32%) Gaps:343/980 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   432 LDEAQMVESSTSAAAEMVRMLPAINRWAVTGTIDELPPLLEFVGRPEVCRPPDAWQTVDKAFQLN 496
            :.|.|.:.::.|   |.:|:..||...|:.....:....:|||    .|...|.  |::.|  ||
  Fly   423 MQELQRLPATMS---EDLRLQAAIELRALRVLNFQRQLRMEFV----QCTRRDT--TLETA--LN 476

  Fly   497 YKCEPLLELLEHSLWRTCKSKVEHELGIPPQTEVVHRLELSNVESLYYREEHLKCHEQFLAAVAK 561
            .|           |::..|.:...|.....:.|...:||.....    |::||    :|||||.:
  Fly   477 IK-----------LYKRTKRQGLREARATEKLEKQQKLEAERKR----RQKHL----EFLAAVLQ 522

  Fly   562 HTR----HNADNSSCLASISPQLL---------------RIILKPFLR------------IRQTC 595
            |.:    .:.:|.:.||.::..::               ||..:...|            |.|..
  Fly   523 HGKDLREFHRNNKAQLARMNKAVMNHHANAEREQKKEQERIEKERMRRLMAEDEEGYRKLIDQKK 587

  Fly   596 SVPVVFNSNVSSTD-YLHPQDLLARLKSNNENECKTELRTWASSYNGLAAIYFIKNDFPQAIKYY 659
            ...:.|  .:|.|| |:  .:|...:|.:.:::.|.:      ...|...|.|.|.         
  Fly   588 DKRLAF--LLSQTDEYI--SNLTQMVKQHKDDQMKKK------EEEGKRLIQFKKE--------- 633

  Fly   660 NLLLKLANEY---NEQNISVDSVLQIHAIYNLLQASSLAPAEHKLT-----ELEHKKYQAQMSRL 716
               |.::.||   :|.:|..|  :::|.:...        ...|||     .|:|......| ..
  Fly   634 ---LLMSGEYIGIDEGSIVAD--MRVHVVEQC--------TGKKLTGDDAPMLKHLHRWLNM-HP 684

  Fly   717 EWKYLEDNTRVLESALSSYNENLEKVSELEKRFEGSTLDLLATMVNHKTSLHDAIWN-KVRDDFF 780
            .|.:::|.    |.:..|.:::..||.|.....|.:|....||  .:.....|.|.. ||.||.:
  Fly   685 GWDWIDDE----EDSCGSNDDHKPKVEEQPTATEDATDKAQAT--GNDEDAKDLITKAKVEDDEY 743

  Fly   781 R----------QNISVERLENVNSMA----------GMLYFMDIWHNKLQNL------------- 812
            |          ..|..:.:|..:.|.          |:.:.:.:::|.|..:             
  Fly   744 RTEEQTYYSIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQT 808

  Fly   813 ----------------------KSTL---IAEFE---------FLKG------VMQQACEAIKTG 837
                                  .|||   :.|||         ..||      ::|....|.|..
  Fly   809 ISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQNQMRATKFN 873

  Fly   838 VLLSMEIINFIENVTVCHLTDILDANKDKPVKPK--------------KHRYCRLCLIRDS--LN 886
            |||:.     .|.|.           |||.|..|              |:.:|:|..:.::  :.
  Fly   874 VLLTT-----YEYVI-----------KDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIA 922

  Fly   887 QFECLLFAKKLDEKATVTEGLENPSMEISFIKSIFAFLRSKQDFSEW----------KEECQSKL 941
            .:..||....|..|......|.|     ..:.|||   :|...|.:|          |.|...:.
  Fly   923 PYRLLLTGTPLQNKLPELWALLN-----FLLPSIF---KSCSTFEQWFNAPFATTGEKVELNEEE 979

  Fly   942 ELL------SCLQDLVKFQIKYWIE------VEYMVKAFDELEMCKMR--------------ILL 980
            .:|      ..|:..:..::|..:|      |||::|       |.|.              :||
  Fly   980 TILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIK-------CDMSALQRVLYKHMQSKGVLL 1037

  Fly   981 TDDPEEQSNYRILACQLDEQLQFNQYNLQTSQLNFTRLCGRLKYLKHLKEDSADKPCPICQTQDD 1045
            ||..|:..:.:           .....|..:.:...:||......:|::|               
  Fly  1038 TDGSEKGKHGK-----------GGAKALMNTIVQLRKLCNHPFMFQHIEE--------------- 1076

  Fly  1046 VRYVMMVCGHFVCQHCLDSMRRKNGRAGVTKCPLCRQDSPQLYYSVRPGAHKSIIGDFSTKISSV 1110
             :|         |.|        .|..||.       ..|.||             ..|.|...:
  Fly  1077 -KY---------CDH--------TGGHGVV-------SGPDLY-------------RVSGKFELL 1103

  Fly  1111 VELVLKIKGENEQEKIIVFSQWQAILIEIARALSLNGIQF---RNKCTNKDFD------DFKNPL 1166
            ..::.|:|..|  .::::|.|....:..|...|...  ||   |...|.|..|      .|....
  Fly  1104 DRILPKLKATN--HRVLLFCQMTQCMTIIEDYLGWR--QFGYLRLDGTTKAEDRGELLRKFNAKG 1164

  Fly  1167 SNVTCLLMPLSKGSKGLNLIEATHVFLVEPILNPGDERQAIGRIHRFGQKRPTKVHRFIVNETIE 1231
            |:|...|:....|..||||..|..|.:.:...||..:.||..|.||.||:...:|.|.:...::|
  Fly  1165 SDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVE 1229

  Fly  1232 ENILS 1236
            |.||:
  Fly  1230 ERILA 1234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7376NP_001261471.1 SNF2_N 221..601 CDD:278600 41/199 (21%)
PHD_SF 281..320 CDD:304600
TPR 636..669 CDD:197478 5/32 (16%)
RING 1037..1083 CDD:238093 6/45 (13%)
HepA <1096..1238 CDD:223627 41/150 (27%)
Helicase_C 1108..1214 CDD:278689 31/114 (27%)
brmNP_001261906.1 QLQ 172..202 CDD:214931
Drf_FH1 251..390 CDD:283903
HSA 501..573 CDD:214727 17/79 (22%)
BRK 649..693 CDD:197800 10/58 (17%)
PHA02934 687..>824 CDD:165245 23/142 (16%)
SNF2_N 776..1071 CDD:278600 59/336 (18%)
DEXDc 793..932 CDD:238005 26/154 (17%)
Helicase_C 1097..1212 CDD:278689 33/118 (28%)
SnAC 1304..1375 CDD:291293
Bromo_SNF2L2 1425..1530 CDD:99947
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467188
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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