DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7376 and chd-1

DIOPT Version :9

Sequence 1:NP_001261471.1 Gene:CG7376 / 38715 FlyBaseID:FBgn0035689 Length:1270 Species:Drosophila melanogaster
Sequence 2:NP_491994.2 Gene:chd-1 / 172432 WormBaseID:WBGene00010369 Length:1461 Species:Caenorhabditis elegans


Alignment Length:1365 Identity:234/1365 - (17%)
Similarity:449/1365 - (32%) Gaps:471/1365 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IADEVPP--ESPEDPTEFRYGKK--RWVFKDNLVEHKEEILICIEKCQNARTRKLKFRSIRQESG 69
            |||:..|  :.|.|.||.::..|  .|....|..|.:..:.:     .||:..|.....::::..
 Worm   220 IADKGDPNDQIPGDKTEQQFFVKWTGWSHLHNTWESENSLAL-----MNAKGLKKVQNYVKKQKE 279

  Fly    70 SCILVLSHEQTHVRAREIEMEVGEQVLPLFFKDFRGSLEFEVAQQEKEHKRPLKTYVTTKLY--- 131
            ..:...|.::.::...|.|.::.|::...:.|     :|..||.|....:....:..|..|.   
 Worm   280 VEMWKRSADKEYIEFFECEQQMAEELCEEYKK-----VERVVAHQTSRDRAADGSMATEYLIKWS 339

  Fly   132 -----DALYEKHRQTV---------HVEQERSLD--------LPK--RFQS-------------Q 159
                 |..:|..:...         .:|..:|.:        .||  :|:|             :
 Worm   340 GLPYSDCTWEDEKMVAPEQIKAYYHRIENLKSPNKNSNVLRKRPKFEKFESMPDFLKTDGESTHK 404

  Fly   160 LRKYQQRTVSWMLGREQQITQVPANFIVLHAIDGITRVFKHKYCLQFYPFEEEIPKISLPPGGIL 224
            ||.||...::||:                           :.:|              .....||
 Worm   405 LRDYQLEGLNWMV---------------------------YAWC--------------KGNSSIL 428

  Fly   225 ADEMGLGKTVEFLAMLLMNPRPQDSYRNDYWHQRLEEFSDEVPLKRSRISKKDEVFCICTKKHGK 289
            |||||||||::.:::|                                                 
 Worm   429 ADEMGLGKTIQSISLL------------------------------------------------- 444

  Fly   290 RVQCTKCRRWQHEMCMTISEKSDLPHLCPSCWSELVKSGERLVESGATIIVSPNAIKMQWFEEIH 354
                           .::..:.||                    :|..::|.|.:....|.:|..
 Worm   445 ---------------ASLFHRYDL--------------------AGPYLVVVPLSTMAAWQKEFA 474

  Fly   355 KHISPSLKVLLYFG-------LHSTFW-VSPFDLAQYDVVLTDYTILRNEIYHTTDFKSDRQMRH 411
            :. :|.:.:::|.|       :....| |......:.:.:||.|.||                  
 Worm   475 QW-APEMNLVVYMGDVVSRDMIRQYEWFVGGTKKMKINAILTTYEIL------------------ 520

  Fly   412 QQRYMRPNSPLLMVNWWRVCLDEAQMVESSTSAAAEMVRMLPAINRWAVTGT-----IDELPPLL 471
                ::..:.|..::|..:.:|||..:::..|...:.:......::..:|||     :.||..||
 Worm   521 ----LKDKAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQNSLKELWALL 581

  Fly   472 EFVGRPEVCRPPDAWQTVDKAF-QLNYK-CEPLLELLEHSLWRTCKSKVEHELGIPPQTEVVHRL 534
            .|: .||..   |.|:..:.|. :.|:| ...|.:.||..|.|..|..||..|  ||:||.:.|:
 Worm   582 HFI-MPEKF---DCWEEFETAHNESNHKGISALHKKLEPFLLRRVKKDVEKSL--PPKTEQILRV 640

  Fly   535 ELSNVESLY--------YRE-----------------EHLKCHEQFLAAVAKHTRHNADNSSCLA 574
            :::..:..:        |||                 |..||...  |::.:...|..|::.   
 Worm   641 DMTAHQKQFYKWILTKNYRELSKGVKGSINGFVNLVMELKKCCNH--ASLTRQYDHIYDDAQ--- 700

  Fly   575 SISPQLLR-----IILKPFL-RIRQTCSVPVVFNSNVSSTDYLHPQDLLARLKSNN-ENECKTEL 632
            ....|||:     |:|...| |::......::|:..|...|.|.....|.|..|.. :...:.:|
 Worm   701 GRLQQLLKSSGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADL 765

  Fly   633 RTWA-SSYNGLAAIYFIKNDFPQAIKYYNLLLKLA---------NEYNEQNISVDSVLQIHA--- 684
            |..| ..||...:..|.   |..:.:...|.:.||         :::|.|| .:.::.:.|.   
 Worm   766 RKQALDHYNAPGSTDFA---FLLSTRAGGLGINLATADTVIIFDSDWNPQN-DLQAMSRAHRIGQ 826

  Fly   685 -----IYNLLQASSLAPAEHKLTELEHKKYQAQMSRLEWKYLEDNTRVLESALSSYNENLEK--- 741
                 ||.|:...|:   |.::.|...:|.......::.......|.:.::|.:|.:...:|   
 Worm   827 TKTVNIYRLVTKGSV---EEEIVERAKRKLVLDHLVIQRMDTTGKTVLSKNATASGSVPFDKQEL 888

  Fly   742 -------VSELEKRFEGS----TLDLLATMVNHKT-SLHDAIW--NKVRDDFFRQNISVERLENV 792
                   ..||.|..||.    .:|:...::..:| ...:.:.  |::...|...|.:::..:::
 Worm   889 SAILKFGAVELFKEKEGEEQEPEVDIDRILMGAETREAEEEVMKENELLSSFKYANFAIDEEKDI 953

  Fly   793 NSMAGMLYFMDIW--------HNK-LQNLKSTLIAEFEFLKGVMQQACEAI-------------- 834
            .:..      |.|        .|: |:..:...:||........:|....:              
 Worm   954 AAAT------DEWAAIIPEEDRNRILEEERMKELAEMNLAPRQRKQPIPQVVEDDDGDDDEEEDD 1012

  Fly   835 --------KTGVLLSMEIINFIE-----NVTVCHLTDIL-DANKDKPVKPKKHRYCRLCLIRDSL 885
                    ..|.....||..||:     ::.:..|.:|. ||..:      :|....:..:.:||
 Worm  1013 TGKKKKKKAVGNFTIPEIKRFIKSFRKFSMPLNRLEEIAQDAELE------EHSTDEMKKLVESL 1071

  Fly   886 NQFECLLFAKKLD-------------EKATVTEGLENPSMEISF---------IKSIFAFLRSKQ 928
            :: .|...|.:.|             ||..:....:..:.:::.         :|.:...|:|::
 Worm  1072 SE-ACKKAADEFDSNEKNGDAGAAESEKKDIERKFKFHTCDVNLKQIERSHAELKPLHEILKSEE 1135

  Fly   929 DFSEWKEECQSKLEL-----------LSCLQDLVKFQIKYW------------------------ 958
            ..:.:|....:||:.           .:.|..:.|:....|                        
 Worm  1136 TKTSFKPPANAKLQKGWDVDWSRPDDSALLLGVWKYGYGSWEAIKMDPTLGLADKIFIKDKTKKP 1200

  Fly   959 ------IEVEYMVKAF--DELEMC--KMRILLTDD----PE---------------------EQS 988
                  :.|:|::|..  |:::..  |.|....||    ||                     |:.
 Worm  1201 QGKNLQVRVDYLLKLMSKDKVKTTEKKERKRKADDVPVGPEKKKRHTNNVPQEGEKKKKEKKEEK 1265

  Fly   989 NYRILACQL-----DEQLQFNQYNLQTSQ--LNFTRLCGRL-KYLKHLKEDSADKPCPICQTQDD 1045
            |...|..||     |:.|........:::  |...:||..: ||:|.|||....|     ...|:
 Worm  1266 NSSSLKDQLALLSIDKSLYGGALEDSSAKPFLECVKLCMPVHKYMKKLKEAQEAK-----NQADE 1325

  Fly  1046 VRYVMMVCGHFVCQHCLDSMRRKNGRAGVTK---------CPLCRQDSPQL---YYSVRPGAHKS 1098
            .:|:..:...|:  ..|:::.:|..:..:.|         |....::..::   |.|:....||:
 Worm  1326 AKYLTRLGDSFL--ENLETLIKKKPKTNIRKWYNYLWIFLCKFTLREPGEMADRYRSITSDKHKN 1388

  Fly  1099  1098
             Worm  1389  1388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7376NP_001261471.1 SNF2_N 221..601 CDD:278600 80/425 (19%)
PHD_SF 281..320 CDD:304600 2/38 (5%)
TPR 636..669 CDD:197478 8/42 (19%)
RING 1037..1083 CDD:238093 7/54 (13%)
HepA <1096..1238 CDD:223627 2/3 (67%)
Helicase_C 1108..1214 CDD:278689
chd-1NP_491994.2 CHROMO <232..276 CDD:237991 10/48 (21%)
Chromo 312..362 CDD:278797 8/49 (16%)
SNF2_N 408..688 CDD:278600 76/435 (17%)
DEXDc 427..569 CDD:238005 37/248 (15%)
Helicase_C 710..825 CDD:278689 25/118 (21%)
DUF4208 1289..1379 CDD:290618 17/96 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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