DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prdm13 and zfat

DIOPT Version :9

Sequence 1:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster
Sequence 2:XP_012820307.2 Gene:zfat / 734084 XenbaseID:XB-GENE-981323 Length:1212 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prdm13NP_648032.1 COG5048 280..>380 CDD:227381
C2H2 Zn finger 323..343 CDD:275368
zf-H2C2_2 336..358 CDD:290200
C2H2 Zn finger 351..371 CDD:275368
zf-C2H2 406..427 CDD:278523
C2H2 Zn finger 408..427 CDD:275368
zfatXP_012820307.2 zf-C2H2 265..287 CDD:395048
C2H2 Zn finger 267..287 CDD:275368
zf-H2C2_5 293..317 CDD:404746
C2H2 Zn finger 295..315 CDD:275368
C2H2 Zn finger 322..343 CDD:275368
C2H2 Zn finger 350..371 CDD:275368
C2H2 Zn finger 400..420 CDD:275368
C2H2 Zn finger 428..448 CDD:275368
C2H2 Zn finger 454..472 CDD:275368
C2H2 Zn finger 714..734 CDD:275368
zf-H2C2_5 740..764 CDD:404746
C2H2 Zn finger 742..792 CDD:275368
COG5048 <761..926 CDD:227381
C2H2 Zn finger 802..821 CDD:275368
C2H2 Zn finger 852..873 CDD:275368
C2H2 Zn finger 881..901 CDD:275368
C2H2 Zn finger 909..929 CDD:275368
zf-H2C2_5 936..959 CDD:404746
C2H2 Zn finger 938..958 CDD:275368
C2H2 Zn finger 966..987 CDD:275368
C2H2 Zn finger 1013..1031 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24403
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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