DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prdm13 and PRDM13

DIOPT Version :9

Sequence 1:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_067633.2 Gene:PRDM13 / 59336 HGNCID:13998 Length:707 Species:Homo sapiens


Alignment Length:676 Identity:158/676 - (23%)
Similarity:206/676 - (30%) Gaps:355/676 - (52%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 DTCSMA------IPTSALLGSTVMP--TDGSRSHCQLSNGELI-VSG-------SLLRQIKLSED 124
            |.|..|      :|.:..||..:..  ..|.:...::..|||: .||       .|:|..:.|::
Human    15 DCCIPAGLRLGPVPGTFKLGKYLSDRREPGPKKKVRMVRGELVDESGGSPLEWIGLIRAARNSQE 79

  Fly   125 VYSFNAIFELHGGQVRVRLVRDVAREDEIVAWFGEELVLLMGIP-FLTPLNIQ-GNSRYMCHLCH 187
             .:..||.:|.|||:..|.:|||...:|:..|:...|.....|| ..||.:.: |..||:|..|.
Human    80 -QTLEAIADLPGGQIFYRALRDVQPGEELTVWYSNSLAQWFDIPTTATPTHDEKGEERYICWYCW 143

  Fly   188 LTFETPHPLKIHLALGC-----GRSAMDILWMRLHY-------ALKAA----------------- 223
            .||..|:.||.||...|     |..|.      ||:       |:.||                 
Human   144 RTFRYPNSLKAHLRFHCVFSGGGGGAF------LHHEHAARQGAVPAADGLGLSPKPPAPDFAAP 202

  Fly   224 ARSHTETQH--SPIP-------------ATSSTSSASPT-------------------------- 247
            :::.|...|  .|.|             |:|:.|:.|||                          
Human   203 SQAGTLRPHPLGPPPVQACGAREGIKREASSAPSATSPTPGKWGQPKKGKEQLDRALDMSGAARG 267

  Fly   248 ----------------------------------------------------------------- 247
                                                                             
Human   268 QGHFLGIVGGSSAGVGSLAFYPGVRSAFKPAGLARAAAAAHGDPYREESSSKQGAGLALGRLLGG 332

  Fly   248 ------------------------HS-------------PPPQMPP------------------- 256
                                    |:             |||..||                   
Human   333 GRACGRPGSGENSAAGGAGHHHHHHAHHHHHPKCLLAGDPPPPPPPGLPCSGALRGFPLLSVPPE 397

  Fly   257 RFSAFRPI-------AAL------------------------------------TQSLPMV---- 274
            ..|||:.:       |||                                    ...||.|    
Human   398 EASAFKHVERAPPAAAALPGARYAQLPPAPGLPLERCALPPLDPGGLKAYPGGECSHLPAVMPAF 462

  Fly   275 -----------PVTTAATP--------LSYLPSMSM----ATAPLSTNPMNAAAQIEAIV----- 311
                       |.|||..|        |.|..|:|.    |.|.||...:.:.|.|:..:     
Human   463 TVYNGELLYGSPATTAYYPLKLHFGGLLKYPESISYFSGPAAAALSPAELGSLASIDREIAMHNQ 527

  Fly   312 ------------------------------------SNMGASKQGHLCIYCGKVYSRKYGLKIHI 340
                                                |..|..|.||||:||||:||||||||||:
Human   528 QLSEMAAGKGRGRLDSGTLPPAVAAAGGTGGGGSGGSGAGKPKTGHLCLYCGKLYSRKYGLKIHM 592

  Fly   341 RTHTGFKPLKCKFCLRPFGDPSNLNKHVRLHLQTHPSSSAGVADGGASGADMDGDVDIEGETDAD 405
            |||||:||||||.||||||||||||||:|||                          .||.|  .
Human   593 RTHTGYKPLKCKVCLRPFGDPSNLNKHIRLH--------------------------AEGNT--P 629

  Fly   406 YQCHVCHKSFPRRRDLQRHMETRHGG 431
            |:|..|.|...|||||:||:::||.|
Human   630 YRCEFCGKVLVRRRDLERHVKSRHPG 655

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prdm13NP_648032.1 COG5048 280..>380 CDD:227381 60/152 (39%)
C2H2 Zn finger 323..343 CDD:275368 16/19 (84%)
zf-H2C2_2 336..358 CDD:290200 18/21 (86%)
C2H2 Zn finger 351..371 CDD:275368 17/19 (89%)
zf-C2H2 406..427 CDD:278523 11/20 (55%)
C2H2 Zn finger 408..427 CDD:275368 10/18 (56%)
PRDM13NP_067633.2 SET 14..111 CDD:279228 26/96 (27%)
C2H2 Zn finger 137..160 CDD:275369 10/22 (45%)
zf-C2H2 137..159 CDD:278523 10/21 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 184..213 4/28 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 226..255 6/28 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 336..372 1/35 (3%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 545..567 1/21 (5%)
C2H2 Zn finger 575..595 CDD:275368 16/19 (84%)
zf-C2H2 575..595 CDD:278523 16/19 (84%)
zf-H2C2_2 588..610 CDD:290200 18/21 (86%)
zf-C2H2 602..623 CDD:278523 18/20 (90%)
C2H2 Zn finger 603..623 CDD:275368 17/19 (89%)
zf-C2H2_4 630..653 CDD:290605 11/22 (50%)
C2H2 Zn finger 632..650 CDD:275368 10/17 (59%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 647..707 5/9 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165159425
Domainoid 1 1.000 51 1.000 Domainoid score I11627
eggNOG 1 0.900 - - E33208_3BB5Z
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5488
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D489976at33208
OrthoFinder 1 1.000 - - FOG0007194
OrthoInspector 1 1.000 - - oto90459
orthoMCL 1 0.900 - - OOG6_108704
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5610
SonicParanoid 1 1.000 - - X6071
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
1211.630

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