DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prdm13 and sens

DIOPT Version :10

Sequence 1:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_524818.1 Gene:sens / 45328 FlyBaseID:FBgn0002573 Length:541 Species:Drosophila melanogaster


Alignment Length:107 Identity:38/107 - (35%)
Similarity:49/107 - (45%) Gaps:29/107 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 CIYCGKVYSRKYGLKIHIRTHTGFKPLKCKFCLRPFGDPSNLNKHVRLHLQTHPSSSAGVADGGA 387
            |.||||.:.:|..:|.|...|||.||.||..||:.|...|||..|:|.|....|           
  Fly   443 CQYCGKRFHQKSDMKKHTYIHTGEKPHKCTVCLKAFSQSSNLITHMRKHTGYKP----------- 496

  Fly   388 SGADMDGDVDIEGETDADYQCHVCHKSFPRRRDLQRHMETRH 429
                              :.||:|.:||.|:.||:||.|:||
  Fly   497 ------------------FGCHLCDQSFQRKVDLRRHRESRH 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prdm13NP_648032.1 KREPA <250..>352 CDD:483960 14/28 (50%)
C2H2 Zn finger 323..343 CDD:275368 8/19 (42%)
C2H2 Zn finger 351..371 CDD:275368 9/19 (47%)
zf-C2H2 406..427 CDD:395048 10/20 (50%)
C2H2 Zn finger 408..427 CDD:275368 10/18 (56%)
sensNP_524818.1 zf-C2H2 413..435 CDD:395048
C2H2 Zn finger 415..435 CDD:275368
zf-C2H2 441..463 CDD:395048 8/19 (42%)
C2H2 Zn finger 443..463 CDD:275368 8/19 (42%)
zf-H2C2_2 455..480 CDD:463886 12/24 (50%)
C2H2 Zn finger 471..491 CDD:275368 9/19 (47%)
zf-H2C2_2 483..506 CDD:463886 9/51 (18%)
C2H2 Zn finger 499..516 CDD:275368 9/16 (56%)
Blue background indicates that the domain is not in the aligned region.

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