DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prdm13 and Zfp462

DIOPT Version :10

Sequence 1:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster
Sequence 2:XP_038966959.1 Gene:Zfp462 / 362522 RGDID:1562123 Length:2565 Species:Rattus norvegicus


Alignment Length:427 Identity:80/427 - (18%)
Similarity:136/427 - (31%) Gaps:175/427 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 SPAKRMRMSNPRPGVYASQYTPKDTCSMAIPTSALLGSTVMPTDGSRSHCQLSNGELIVSGSLLR 117
            ||.|.:.:::..|.:.::.|    .|            ||..::.:..|..|::......|..::
  Rat  1449 SPEKSIHLASANPAISSTPY----QC------------TVCQSEYNNLHGLLTHYGKKHPGMKVK 1497

  Fly   118 QIKLSEDV-YSFNAIFE----------LHG---------GQVRVR---LVRDVAREDEIVAWFGE 159
            ....::|| .:..|:::          :||         ..::|.   .|.||.:..:|.....|
  Rat  1498 AADFAQDVDINPGAVYKCRHCPYINTRIHGVLTHYQKRHPAIKVTAEDFVHDVEQSADITQNDVE 1562

  Fly   160 ELVLLMGIPFLTPLNIQGNSRYMCHLCHLTFETPHPLKIHLALGCGRSAMDILWMRLHYALKAAA 224
            |...:..         ||...|.|.||..|..|...||||.                        
  Rat  1563 ETSRIFK---------QGYGAYRCKLCPYTHGTLEKLKIHY------------------------ 1594

  Fly   225 RSHTETQHSPIPATSSTSSASPTHSPPPQMPPRFSAFRPIAALTQSLPMVPV------TTAATPL 283
                |..|:                     .|.|..|.|      |.|.:||      ||..:| 
  Rat  1595 ----EKYHN---------------------QPEFDVFSP------SPPKLPVSLEPEITTEVSP- 1627

  Fly   284 SYLPSMSMATAPLSTNPMNAAAQIEAIVSNMGASKQGHLCIYCGKVYSRKYGLKIHIRTHTGFKP 348
               ..:||....:..:||:.|        :...|                     |:.:||.|:.
  Rat  1628 ---SQVSMTEEEVGEDPMSTA--------HFSTS---------------------HLVSHTVFRC 1660

  Fly   349 LKCK-FCLRPFGDPSNLNKHVRL---HLQTHPSSSAGVADGGASGADMDGDVDIEGETDADYQCH 409
            ..|| ||....|    :.:|.|:   :::..|                      ||:.:. ::|.
  Rat  1661 QLCKYFCSTRKG----IARHYRIKHNNVRAQP----------------------EGKNNL-FKCA 1698

  Fly   410 VCHKSFPRRRDLQRHMETRH--GGHHSHSHSESRSSS 444
            :|..:.|.|:.|..|.:.||  ..:::|..:.||:.|
  Rat  1699 LCAYTNPIRKGLAAHYQKRHDIDAYYTHCLAASRTIS 1735

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prdm13NP_648032.1 KREPA <250..>352 CDD:483960 21/107 (20%)
C2H2 Zn finger 323..343 CDD:275368 1/19 (5%)
C2H2 Zn finger 351..371 CDD:275368 7/23 (30%)
zf-C2H2 406..427 CDD:395048 6/20 (30%)
C2H2 Zn finger 408..427 CDD:275368 6/18 (33%)
Zfp462XP_038966959.1 C2H2 Zn finger 2052..2072 CDD:275368
zf-H2C2_5 2084..2108 CDD:404746
C2H2 Zn finger 2086..2106 CDD:275368
C2H2 Zn finger 2115..2136 CDD:275368
C2H2 Zn finger 2144..2165 CDD:275368
C2H2 Zn finger 2315..2335 CDD:275368
C2H2 Zn finger 2361..2381 CDD:275368
C2H2 Zn finger 2389..2410 CDD:275368
C2H2 Zn finger 2475..2495 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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