DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prdm13 and CG9932

DIOPT Version :9

Sequence 1:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_609599.1 Gene:CG9932 / 34701 FlyBaseID:FBgn0262160 Length:2171 Species:Drosophila melanogaster


Alignment Length:551 Identity:105/551 - (19%)
Similarity:170/551 - (30%) Gaps:228/551 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 PSTSITPTSMTTSSTE---TTLTATTSTASPAKRMRMSNPRPGV--YASQYTPKDTCSMAIPTSA 86
            ||::..|:|.::||:.   :|.:|..|.::.|.....|.|.|..  .||.|.........:||.|
  Fly  1334 PSSNSFPSSSSSSSSSSMASTSSAAGSASASASSTTSSPPPPAASSSASAYMAAMAPQKHVPTVA 1398

  Fly    87 LL------------GSTVMPT--DGSR--------SHC-QLSNGELIVSGSLLRQIKLSEDVYSF 128
            .:            ||..:.|  ||.|        .|| |:||.:.::.    |..:|.      
  Fly  1399 QMSHPQTRFHSHSPGSPSLLTMADGDRREPSPYRCGHCHQVSNWKHVIQ----RHCRLK------ 1453

  Fly   129 NAIFELHGGQVRVRLVRDVAREDEIVAWFGEELVLLMGIPFLTPLNIQGNSRYMCHLCHLTFETP 193
                  |.|.:|:..:...|                         ::..|:.             
  Fly  1454 ------HSGDIRIETLERGA-------------------------SVSANAP------------- 1474

  Fly   194 HPLKIHLALGCGRSAMDILWMRLHYALKAAARSHTETQHSPIPAT-----SSTSSASPTHSPPPQ 253
               .|:..||.|.|              ..::||.....:||.:.     |:|::.|..:|    
  Fly  1475 ---PIYRPLGAGAS--------------NESQSHIHNPSNPITSNILKSGSNTNANSNINS---- 1518

  Fly   254 MPPRFSAFRPIAALTQSLPMVPVTTAATPLSYLPSMSMATAPLSTNPMNA-----------AAQI 307
                 ::.:|:...|:.|..:    ..||||       |:|....|..|.           ||..
  Fly  1519 -----NSAQPLLLTTKQLEQI----FHTPLS-------ASAAAVVNAANTQQDIQAAAAYWAAAC 1567

  Fly   308 EAIVSNMGA---------------------------------SKQGHLCIYCGKVYSRKYGLKIH 339
            :|:|:|..|                                 ||| ..|..|..:...|..:..|
  Fly  1568 KAVVANSSAEELLQLQQNDQIEITRLPTTTEHSIGSSGNNTKSKQ-QKCPVCPYISESKSQMNYH 1631

  Fly   340 IRTHTGFKP--LKCKFCLRPFGDPSNLNKHVR-LHLQTHPSSSAGVADGGASGADMDG------- 394
            :..|   ||  .:|:.|........:|:.|:| :|.|...:|.||.|.|.|.|....|       
  Fly  1632 VSLH---KPTQYECRLCTFVCAKKQHLSSHMRTVHQQQMVASGAGAAAGAAGGVGGGGAASLGLD 1693

  Fly   395 ----------------------------DVDIEGETDA---------DYQ------CHVCHKSFP 416
                                        .:.::..:||         :||      |..|...|.
  Fly  1694 FSVALQLAAAAKQVQQLPASTPLSIDLSQIQMDAASDAELNPQQLPPEYQYKLISYCPRCPARFA 1758

  Fly   417 RRRDLQRHMETRHGGH---HSHSHSESRSSS 444
            ::.:.:|:.:.....|   ||....|.:..|
  Fly  1759 QKHNDERNAKQELEQHLLAHSDQEPEDQDPS 1789

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prdm13NP_648032.1 COG5048 280..>380 CDD:227381 32/146 (22%)
C2H2 Zn finger 323..343 CDD:275368 4/19 (21%)
zf-H2C2_2 336..358 CDD:290200 6/23 (26%)
C2H2 Zn finger 351..371 CDD:275368 5/20 (25%)
zf-C2H2 406..427 CDD:278523 6/26 (23%)
C2H2 Zn finger 408..427 CDD:275368 4/18 (22%)
CG9932NP_609599.1 C2H2 Zn finger 339..359 CDD:275368
C2H2 Zn finger 366..386 CDD:275368
C2H2 Zn finger 394..414 CDD:275368
C2H2 Zn finger 816..836 CDD:275370
C2H2 Zn finger 844..862 CDD:275370
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24403
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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