DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Prdm13 and si:dkeyp-84f3.5

DIOPT Version :9

Sequence 1:	NP_648032.1	Gene:	Prdm13 / 38713	FlyBaseID:	FBgn0035687	Length:	465	Species:	Drosophila melanogaster
Sequence 2:	NP_001313282.1	Gene:	si:dkeyp-84f3.5 / 334144	ZFINID:	ZDB-GENE-050208-162	Length:	580	Species:	Danio rerio

Alignment Length:	170	Identity:	43/170 - (25%)
Similarity:	64/170 - (37%)	Gaps:	44/170 - (25%)

- Green bases have known domain annotations that are detailed below.

  Fly   297 STNPMNAAAQIEAIVSNMGASKQGHLCIYCGKVYSRKYGLKIHIRTHTGFKPLKCKFCLRPFGDP 361
            |..|..|..|...::.:|.|.:...|.    :|..:....:|:..|:|| |...||.|.|.|...
Zfish   307 SVLPAKAKQQYHGVMRHMVAKQHKQLL----RVNIKGKPKRINRATYTG-KLFSCKHCHRVFVHS 366

  Fly   362 SNLNKHVRLHLQTHPSSSAGVADGGASGADMDGDVDIEGETDADYQCHVCHKSFPRRRDLQRHME 426
            |:|::|:|.|..|.                              :.|..|.:.||:|.|:.||:.
Zfish   367 SSLSRHMRYHKGTL------------------------------HACVYCGRHFPQRCDVTRHVA 401

  Fly   427 TRHGGHHSHSHSESRSSSTSTSST------TTMTATVTTS 460
            ..|.   |...|:|:..||....|      ....:|.|||
Zfish   402 MYHA---SELQSKSQEESTMEHETGNGEQEPMKESTQTTS 438

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Prdm13	NP_648032.1	COG5048	280..>380	CDD:227381	24/82 (29%)
		C2H2 Zn finger	323..343	CDD:275368	2/19 (11%)
		zf-H2C2_2	336..358	CDD:290200	9/21 (43%)
		C2H2 Zn finger	351..371	CDD:275368	9/19 (47%)
		zf-C2H2	406..427	CDD:278523	8/20 (40%)
		C2H2 Zn finger	408..427	CDD:275368	8/18 (44%)
si:dkeyp-84f3.5	NP_001313282.1	None

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR24403
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	1.100