DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prdm13 and Zfp827

DIOPT Version :10

Sequence 1:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster
Sequence 2:XP_038954094.1 Gene:Zfp827 / 291940 RGDID:1560620 Length:1352 Species:Rattus norvegicus


Alignment Length:545 Identity:108/545 - (19%)
Similarity:184/545 - (33%) Gaps:187/545 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 TTLTATTSTASPAKRMRMSNPRPGVYASQYTPKDTCSMAIPTSALLGSTVMPTDGSRSHCQLSNG 107
            |.|..|..|::..:|.............:..||:  ...:|||..|.:    .|.|.:|.:..:.
  Rat   492 TELVGTVMTSNTPERTGQGGAGVAPLLVKEEPKE--DNGLPTSFTLNA----ADRSANHTKPKDP 550

  Fly   108 ELIVSGS---LLRQ---IKLSEDVYSFNAIFELHGGQVRVRL-----VRDVAREDEIV------- 154
            ...|..|   |..|   :|::.|.     :.:|.....:..:     |::..:|:|.:       
  Rat   551 SEFVPNSAAALFSQDISVKMASDF-----LMKLSAANQKEPMNLNFKVKEEPKEEETLSMPLPRS 610

  Fly   155 --AWFGEELVLLMGI---PFLTPLNIQGN--SRYMCHLCHLTFETPHPLKIHLALGCGRSAMDIL 212
              |:..|..|....|   | |||...:||  .|.|                     ..::|.::|
  Rat   611 SYAFSPEPEVATPSISEDP-LTPQEGKGNVLRRDM---------------------SAKAASELL 653

  Fly   213 WMRLHYALKAAARSHTETQ-----HSP--IPATSSTSSASPTHS------------------PPP 252
                   :|.:|.|:.|||     ..|  :....|.:|.||:.:                  |..
  Rat   654 -------MKLSAESYKETQVVTVKEEPMEVDIQDSPASISPSRNVGYSTLMGREKTEPLQKLPEG 711

  Fly   253 QMPPRFSAFRPIAALTQSLPMV-----------------PVTTAATPLSYLPSMSMATAPLSTNP 300
            ::||..:.|....::..:..::                 .:.|..:|  :....:...:|.::|.
  Rat   712 RVPPERNLFSQDISVKMASELLFQLSEKVSKEHNHTKENTMRTTTSP--FFSEDTFRQSPFTSNS 774

  Fly   301 MN------------AAAQIEAIVSNMG-------ASKQGHLCIYCGKVYSRKYGLKIHIRTHTGF 346
            .:            :|.:.:.||...|       .|.|...|..||||:.|:..|..|:..||..
  Rat   775 KDLLPGEPVLHGRVSAPETDKIVLEAGNGLPSWKFSDQLFPCDVCGKVFGRQQTLSRHLSLHTVL 839

  Fly   347 ------KPLKCKFCLRPFGDP--SNLNKHVRLH------LQTHPSSSAGVADGGASGADMDGDVD 397
                  :..||..|  |:...  :|||:|:.:|      ..|....||..::|.      ||.  
  Rat   840 VSPPEERKYKCHLC--PYAAKCRANLNQHLTVHSVKLVSTDTEDIVSAVTSEGS------DGK-- 894

  Fly   398 IEGETDADYQCHVC------------HKSF--------------------PRRRDLQRHMETRHG 430
               :....|.||||            |.|.                    ....:::.|:.|:|.
  Rat   895 ---KHPYYYSCHVCGFETELNVQFVSHMSLHVDKEQWMFSICCTACDFVTMEEAEMKSHIGTKHT 956

  Fly   431 GHHSHSHSESRSSSTSTSSTTTMTA 455
            |....:.|||.|.|:|:.||.:.:|
  Rat   957 GDDRKTPSESNSPSSSSLSTLSDSA 981

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prdm13NP_648032.1 KREPA <250..>352 CDD:483960 25/143 (17%)
C2H2 Zn finger 323..343 CDD:275368 8/19 (42%)
C2H2 Zn finger 351..371 CDD:275368 7/21 (33%)
zf-C2H2 406..427 CDD:395048 8/52 (15%)
C2H2 Zn finger 408..427 CDD:275368 7/50 (14%)
Zfp827XP_038954094.1 COG5048 352..>440 CDD:227381
C2H2 Zn finger 373..393 CDD:275368
C2H2 Zn finger 401..421 CDD:275368
C2H2 Zn finger 432..452 CDD:275368
C2H2 Zn finger 816..836 CDD:275370 8/19 (42%)
C2H2 Zn finger 850..870 CDD:275370 7/21 (33%)
C2H2 Zn finger 1024..1044 CDD:275368
C2H2 Zn finger 1052..1072 CDD:275368
C2H2 Zn finger 1081..1101 CDD:275368
C2H2 Zn finger 1108..1128 CDD:275368
zf-H2C2_5 1134..1158 CDD:404746
C2H2 Zn finger 1136..1156 CDD:275368
zf-H2C2_2 1149..1173 CDD:463886
C2H2 Zn finger 1164..1183 CDD:275368
C2H2 Zn finger 1193..1213 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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