DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prdm13 and znf335

DIOPT Version :10

Sequence 1:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster
Sequence 2:XP_005167155.1 Gene:znf335 / 100148891 ZFINID:ZDB-GENE-130530-814 Length:1534 Species:Danio rerio


Alignment Length:290 Identity:55/290 - (18%)
Similarity:98/290 - (33%) Gaps:69/290 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 PFLTPLNIQGNSRYMCHLCHLTFETPHPLKIHLALGCGRSAMDILWMRLHYALK--AAARSH--- 227
            |.|.|.|        |.:|...|.:...||.|:....|........::..|..|  ::.:.|   
Zfish   692 PLLRPHN--------CWICGSRFLSQEDLKFHVDSHEGNDPERYKCLQCSYRCKRWSSLKEHMFN 748

  Fly   228 --------------------TETQHSPIPATSSTSSASPTHSPPPQMPPRFSAFRPIAALTQSLP 272
                                ..|:||.:...|.:.....:...|.|: .:.|.|           
Zfish   749 HEGTKPYKCEMCDYTSVYKKDVTRHSAVHNKSKSRKIDVSCVNPSQV-SKVSEF----------- 801

  Fly   273 MVPVTTAATPLSYLPSMSMATAPLSTNPMNAAAQIEAIVSNMGASKQGHLCIYCGKVYSRKYGLK 337
            ..|:.:...|:....:..|.|                     .::::.|:|..|||.:.::|..|
Zfish   802 PCPICSRVYPMQKRLTQHMKT---------------------HSTEKPHMCDKCGKSFKKRYTFK 845

  Fly   338 IHIRTH---TGFKPLKCKFCLRPFGDPSNLNKHVRLHLQTHPSSSAGVADGGASGADMDGDVDIE 399
            :|:.||   .|....||:||.....|..:|..|...|....|..........:....:...:.|:
Zfish   846 MHLLTHIQNCGNSLFKCEFCDYTCNDKKHLLNHQLSHTNDKPFKCEECKYSTSKEDFLVSHIAIK 910

  Fly   400 GETDADYQCHVCHKSFPRRRDLQRHMETRH 429
            ...:..:.|.:||.:...|::|:.|::.||
Zfish   911 HTGEKPFSCEMCHFTTRHRKNLRLHVQCRH 940

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prdm13NP_648032.1 KREPA <250..>352 CDD:483960 20/104 (19%)
C2H2 Zn finger 323..343 CDD:275368 7/19 (37%)
C2H2 Zn finger 351..371 CDD:275368 6/19 (32%)
zf-C2H2 406..427 CDD:395048 6/20 (30%)
C2H2 Zn finger 408..427 CDD:275368 6/18 (33%)
znf335XP_005167155.1 COG5048 <592..838 CDD:227381 31/186 (17%)
C2H2 Zn finger 699..719 CDD:275368 6/19 (32%)
C2H2 Zn finger 729..749 CDD:275368 3/19 (16%)
zf-H2C2_2 741..766 CDD:463886 1/24 (4%)
zf-H2C2_5 755..779 CDD:404746 3/23 (13%)
C2H2 Zn finger 803..823 CDD:275368 4/40 (10%)
zf-H2C2_2 815..840 CDD:463886 7/45 (16%)
C2H2 Zn finger 831..851 CDD:275368 7/19 (37%)
C2H2 Zn finger 862..882 CDD:275368 6/19 (32%)
C2H2 Zn finger 890..911 CDD:275368 1/20 (5%)
C2H2 Zn finger 919..936 CDD:275368 5/16 (31%)
rne <1073..1165 CDD:236766
C2H2 Zn finger 1215..1235 CDD:275370
SFP1 <1236..1320 CDD:227516
C2H2 Zn finger 1243..1263 CDD:275368
zf-H2C2_5 1269..1293 CDD:404746
C2H2 Zn finger 1271..1291 CDD:275368
zf-H2C2_2 1283..1308 CDD:463886
C2H2 Zn finger 1299..1320 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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