DRSC/TRiP Functional Genomics Resources

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Protein Alignment ZKSCAN4 and si:dkey-122c11.8

DIOPT Version :9

Sequence 1:NP_061983.2 Gene:ZKSCAN4 / 387032 HGNCID:13854 Length:545 Species:Homo sapiens
Sequence 2:XP_017211097.1 Gene:si:dkey-122c11.8 / 108183696 ZFINID:ZDB-GENE-110913-23 Length:358 Species:Danio rerio


Alignment Length:338 Identity:116/338 - (34%)
Similarity:159/338 - (47%) Gaps:76/338 - (22%)


- Green bases have known domain annotations that are detailed below.


Human   205 EDAMVASRLTPGSQGLLKMEDVALTLTPGWTQLDSSQVNLYRDEKQENHSSLVSLGGEIQTKSRD 269
            ||..:....|...:.|.:..|:.|.                   |::.|..     .|::.|.:|
Zfish     9 EDVKIEETFTVKQEDLQEQTDLMLL-------------------KEKTHQQ-----NEMEEKQQD 49

Human   270 LPPVKKLPEKEHGKICHLREDIAQIPTHAEAGEQEGRLQRKQKNAIGSRRHY-CHECGKSFAQSS 333
            :...:|                   ||..:.....|| .||.|    .|.:: |.:|||||:|..
Zfish    50 MTTDEK-------------------PTLTKKTLSRGR-PRKSK----PRCNFSCKQCGKSFSQKP 90

Human   334 GLTKHRRIHTGEKPYECEDCGKTFIGSSALVIHQRVHTGEKPYECEECGKVFSHSSNLIKHQRTH 398
            .|..|.|.||.||.|.|:.|||:|..:..|.:|.|:||||:||.|::|||.|..:.||..|.|.|
Zfish    91 KLDVHIRDHTREKAYTCKQCGKSFYNTRNLTVHMRIHTGERPYTCQQCGKSFHKTGNLTVHLRIH 155

Human   399 TGEKPYECDDCGKTFSQSCSLLEHHKIHTGEKPYQCNMCGKAFRRNSHLLRHQRIHGDKNVQNPE 463
            |||:||.|..|||:|..:.:|..|.:||||||||.|..|||::.:||:|..|.|.|         
Zfish   156 TGERPYTCQQCGKSFQTTGNLTVHMRIHTGEKPYSCPQCGKSYSQNSNLEVHMRTH--------- 211

Human   464 HGESWESQGRTESQWENTEAPVSYKCNECERSFTRNRSLIEHQKIHTGEKPYQCDTCGKGFTRTS 528
                  :.|||            :.|.:|.:.|.:.::|..|.:||||||||.|..|||.|...|
Zfish   212 ------NGGRT------------FVCTQCGKRFVKKQNLDLHMRIHTGEKPYTCTECGKSFPYKS 258

Human   529 YLVQHQRSHVGKK 541
            .|..|...|.|:|
Zfish   259 TLKHHMIVHTGEK 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ZKSCAN4NP_061983.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 34..55
SCAN 49..160 CDD:128708
KRAB 221..281 CDD:214630 8/59 (14%)
zf-C2H2 320..342 CDD:306579 10/22 (45%)
C2H2 Zn finger 322..342 CDD:275368 10/19 (53%)
zf-H2C2_2 335..357 CDD:316026 12/21 (57%)
C2H2 Zn finger 350..370 CDD:275368 8/19 (42%)
COG5048 <374..544 CDD:227381 69/168 (41%)
C2H2 Zn finger 378..398 CDD:275368 9/19 (47%)
C2H2 Zn finger 406..426 CDD:275368 7/19 (37%)
C2H2 Zn finger 434..454 CDD:275368 9/19 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 455..480 3/24 (13%)
C2H2 Zn finger 489..509 CDD:275368 5/19 (26%)
C2H2 Zn finger 517..537 CDD:275368 8/19 (42%)
si:dkey-122c11.8XP_017211097.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 212 1.000 Inparanoid score I10838
NCBI 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.960

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