DRSC/TRiP Functional Genomics Resources

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Protein Alignment loj and tmed1

DIOPT Version :9

Sequence 1:NP_648027.3 Gene:loj / 38698 FlyBaseID:FBgn0061492 Length:237 Species:Drosophila melanogaster
Sequence 2:NP_001039263.1 Gene:tmed1 / 734138 XenbaseID:XB-GENE-1017173 Length:220 Species:Xenopus tropicalis


Alignment Length:237 Identity:52/237 - (21%)
Similarity:107/237 - (45%) Gaps:31/237 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LTWQRDQINLVLPIALICCCLLIDVTSAQEAQQPWYENLPAVAMDYKVHIDAGKEDCYHQYVKAG 67
            :.|....:.:|||:|            |..|.||....|..:       :.||:::|::|.....
 Frog     1 MAWSSSFLFIVLPLA------------AAVAVQPQDTELTFL-------LPAGRQECFYQTTLYN 46

  Fly    68 ATFYVSFSVVRGGDGM-AGFAVRNPAGEVVKPYQWQATADYTDQVSPGGYYSVCIDNQFSRFAGK 131
            .:..:.:.|: ||.|: ..|:|..|:|.::...:.::...:|.:.:..|.|.:|.||.||..:.|
 Frog    47 GSMEIEYQVI-GGAGLDVDFSVTTPSGILLIMERRRSDGVHTVEPTEAGDYMICFDNSFSTISEK 110

  Fly   132 LVNIYITVV--------KYDAWDKYAKEIEQLQLNMQNFTATVGTVERNINDMMGYQAHSRHRES 188
            ||  :..::        :.|:|....:..|.|.:.:::...::.:|:..:...:..|...|..|:
 Frog   111 LV--FFELIFDNQQGDEEPDSWADVVEPDELLDIKLEDIKESIESVKSRLERSIQMQTVLRAFEA 173

  Fly   189 RDYALLLDNNAYIQTFSISQIVVILITCSVQVFFVRKLFEVK 230
            ||..|...|...:..:|...:.|::....:||:.::.||:.|
 Frog   174 RDRNLQDSNLERVNFWSAINVGVLVTVAFLQVYMLKSLFDDK 215

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
lojNP_648027.3 EMP24_GP25L 47..228 CDD:279450 40/189 (21%)
tmed1NP_001039263.1 EMP24_GP25L 26..212 CDD:366467 40/195 (21%)
COPI vesicle coat-binding. /evidence=ECO:0000255 211..220 3/5 (60%)