DRSC/TRiP Functional Genomics Resources

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Protein Alignment loj and Tmed6

DIOPT Version :9

Sequence 1:NP_648027.3 Gene:loj / 38698 FlyBaseID:FBgn0061492 Length:237 Species:Drosophila melanogaster
Sequence 2:NP_079734.1 Gene:Tmed6 / 66269 MGIID:1913519 Length:239 Species:Mus musculus


Alignment Length:245 Identity:50/245 - (20%)
Similarity:112/245 - (45%) Gaps:30/245 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VLPIALICCCLLIDVTSAQEAQ----------QPWYENLPAVAMDYKVHIDAGKEDCYHQYVKAG 67
            :.|:.|:...:::.:.::.::|          ||.:..  |...|:.:.:..|..:|:.|:....
Mouse     1 MFPLLLVAELVVLSLVTSVKSQETDPLHGSKDQPLFRG--ADRNDFAIVVSPGAIECFWQFADQM 63

  Fly    68 ATFYVSFSVVR----GGDGMAGFAVRNPAGEVVKPYQWQATADYTDQVS----PGGYYSVCIDNQ 124
            ...|.|:.|.|    ..|.........|.|.::...|     |...|::    ..|:|.:|:.|:
Mouse    64 GYLYFSYEVQRILGMSHDRHIVATAHTPQGFLIDTSQ-----DVRGQINFATQETGFYQLCLKNE 123

  Fly   125 FSRFAGKLVNIYITV-VKYDAWDKYAKEIEQLQLN--MQNFTATVGTVERNINDMMGYQAHSRHR 186
            .:||:.  :.:|:.. |.|:..:...|:.::.|||  :.....:...||..:..|..:..::|.|
Mouse   124 QNRFSS--IQVYLNFGVFYEGPEVDHKQSQRKQLNDTLDAIKDSTQRVENQVFHMWRFYNYARMR 186

  Fly   187 ESRDYALLLDNNAYIQTFSISQIVVILITCSVQVFFVRKLFEVKSSSKSR 236
            :..|:.||..|..|:..:|.:|.:.|:::.::|::|:::||...::...:
Mouse   187 KVADFFLLQSNYTYVNWWSTAQSLAIVLSGALQLYFLKRLFTASTTDTKK 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lojNP_648027.3 EMP24_GP25L 47..228 CDD:279450 43/191 (23%)
Tmed6NP_079734.1 EMP24_GP25L 43..227 CDD:279450 42/190 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846897
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1693
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45744
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_109201
Panther 1 1.100 - - LDO PTHR22811
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R7267
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.740

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