DRSC/TRiP Functional Genomics Resources

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Protein Alignment loj and tmed3

DIOPT Version :9

Sequence 1:NP_648027.3 Gene:loj / 38698 FlyBaseID:FBgn0061492 Length:237 Species:Drosophila melanogaster
Sequence 2:NP_001122140.1 Gene:tmed3 / 336391 ZFINID:ZDB-GENE-030131-8335 Length:206 Species:Danio rerio


Alignment Length:200 Identity:41/200 - (20%)
Similarity:85/200 - (42%) Gaps:22/200 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 AMDYKVHIDAGKEDCYHQYVKAGATFYVSFSVVRGGDGMAGFAVRNPAGEVVKPYQWQATADYTD 109
            |.:....:...::.|:::.::.|..|.:.|.|:.||:......|.:|...::...:.:....::.
Zfish    17 ATELTFELPDNEKQCFYEELEQGVKFDIDFQVIAGGNYDVDCFVTDPINNMLYQERKKQYDSFSH 81

  Fly   110 QVSPGGYYSVCIDNQFSRFAGKLVNIYITVVKYDAWDKYAKEIEQLQLNMQNFTA---------T 165
            .....|.|.||..|:||.|:.|.|.:          |..:.|.::|..:....||         :
Zfish    82 TTVMKGVYKVCFSNEFSTFSHKTVYL----------DFRSGEDDRLFPDQNRATALTQMESACLS 136

  Fly   166 VGTVERNINDMMGYQAHSRHRESRDYALLLDNNAYIQTFSISQIVVILITCSVQVFFVRKLFEVK 230
            :..:.:.::|.   |...|.||::|.....|.:..:..:||.:.|::.:.|..||..::..|..|
Zfish   137 IHEILKVVSDS---QTWYRLREAQDRLRAEDLHERVHFWSIGETVILFVVCIGQVLMLKSFFNEK 198

  Fly   231 SSSKS 235
            .:..|
Zfish   199 KTGVS 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lojNP_648027.3 EMP24_GP25L 47..228 CDD:279450 37/189 (20%)
tmed3NP_001122140.1 EMP24_GP25L 19..196 CDD:279450 37/189 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1693
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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