DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loj and Tmed1

DIOPT Version :10

Sequence 1:NP_648027.3 Gene:loj / 38698 FlyBaseID:FBgn0061492 Length:237 Species:Drosophila melanogaster
Sequence 2:XP_006242706.1 Gene:Tmed1 / 315461 RGDID:1311679 Length:262 Species:Rattus norvegicus


Alignment Length:249 Identity:51/249 - (20%)
Similarity:96/249 - (38%) Gaps:46/249 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LLIDVTSAQEAQQPWYENLPAVAMDYKVHIDAGKEDCYHQYVKAGATFYVSFS------------ 75
            ||:......||..|     |....::...:.||::.|::|...|.|:....:.            
  Rat    14 LLLPAVGVGEAGPP-----PIQDGEFTFLLPAGRKQCFYQSAPANASLETEYQFDNSRVEVENRL 73

  Fly    76 ----------------------VVRGGDGM-AGFAVRNPAGEVVKPYQWQATADYTDQVSPGGYY 117
                                  ||.||.|: ..|.:.:|.|.::.....:|...:|.:.:..|.|
  Rat    74 LQVALQSPQALLLYPKQRNGIFVVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEPTEAGDY 138

  Fly   118 SVCIDNQFSRFAGKLVNIYITVVKY------DAWDKYAKEIEQLQLNMQNFTATVGTVERNINDM 176
            .:|.||.||..:.|||...:....:      :.|.:..:..|.|.:.|::...::.|:...:...
  Rat   139 RLCFDNSFSTISEKLVFFELIFDSFQDEEEVEGWAEAVEPEEMLDVKMEDIKESIETMRTRLERS 203

  Fly   177 MGYQAHSRHRESRDYALLLDNNAYIQTFSISQIVVILITCSVQVFFVRKLFEVK 230
            :......|..|:||..|..||...:..:|.:.:.|:|:...:||..:::.|..|
  Rat   204 IQMLTLLRAFEARDRNLQEDNLERVNFWSAANVAVLLLVAVLQVCTLKRFFHDK 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lojNP_648027.3 EMP24_GP25L 47..228 CDD:426051 43/221 (19%)
Tmed1XP_006242706.1 EMP24_GP25L 33..254 CDD:426051 43/220 (20%)

Return to query results.
Submit another query.