DRSC/TRiP Functional Genomics Resources

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Protein Alignment loj and Tmed3

DIOPT Version :9

Sequence 1:NP_648027.3 Gene:loj / 38698 FlyBaseID:FBgn0061492 Length:237 Species:Drosophila melanogaster
Sequence 2:NP_001004249.1 Gene:Tmed3 / 300888 RGDID:1303327 Length:221 Species:Rattus norvegicus


Alignment Length:202 Identity:46/202 - (22%)
Similarity:88/202 - (43%) Gaps:25/202 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 ENLPAVAMDYKVHIDAGKEDCYHQYVKAGATFYVSFSVVRGGDGMAGFAVRNPAGEVV-----KP 98
            |.|....:.:::..:|  :.|:|:.|:.|..|.:.:.|:.||.......|.:|.|.::     |.
  Rat    26 ERLRGAELTFELPDNA--KQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPMGNIIYRETKKQ 88

  Fly    99 YQWQATADYTDQVSPGGYYSVCIDNQFSRFAGKLVNIYITV-----VKYDAWDKYAKEIEQLQLN 158
            |.     .:|.:....|.|..|..|:||.|:.|.|.....|     :..|..:: ...:.|::  
  Rat    89 YD-----SFTYKTEVKGVYRFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNR-VTALTQME-- 145

  Fly   159 MQNFTATVGTVERNINDMMGYQAHSRHRESRDYALLLDNNAYIQTFSISQIVVILITCSVQVFFV 223
                :|.| |:...:..::..|.|.|.||::|.|...|.|:.:..:|:.:.:.:.:....||..:
  Rat   146 ----SACV-TIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLL 205

  Fly   224 RKLFEVK 230
            :..|..|
  Rat   206 KSFFTEK 212

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
lojNP_648027.3 EMP24_GP25L 47..228 CDD:279450 42/190 (22%)
Tmed3NP_001004249.1 EMP24_GP25L 32..209 CDD:279450 42/191 (22%)
COPI vesicle coat-binding. /evidence=ECO:0000255 208..221 2/5 (40%)