Protein Alignment loj and Tmed6

DIOPT Version :10

• Sequence 1: NP_648027.3
• Gene: loj / 38698
• FlyBaseID: FBgn0061492
• Length: 237
• Species: Drosophila melanogaster
• Sequence 2: NP_001099653.1
• Gene: Tmed6 / 291991
• RGDID: 1305260
• Length: 238
• Species: Rattus norvegicus
• Alignment Length: 243
• Identity: 55/243 - (22%)
• Similarity: 110/243 - (45%)
• Gaps: 32/243 - (13%)

  Fly    12 LVLPIALICCCLLIDVTSAQEAQ---------QPWYENLPAVAMDYKVHIDAGKEDCYHQYVKAG 67
            |:|...|:...|   ||||:..:         ||....  |...|:.:.:..|..:|:.|:....
  Rat     4 LLLEAGLVVLSL---VTSAKSQRTDPLHGSKDQPLLRG--ADRHDFAIVVHPGNTECFWQFADQM 63

  Fly    68 ATFYVSFSVVR----GGDGMAGFAVRNPAGEVVKPYQWQATADYTDQVS----PGGYYSVCIDNQ 124
            ...|.|:.|.|    ..|.........|.|.::...|     |...|::    ..|:|.:|:.|:
  Rat    64 GYLYFSYEVQRTLGMSHDRHIVATAHTPQGFLIDTSQ-----DVRGQINFATQETGFYQLCLKNE 123

  Fly   125 FSRFAGKLVNIYITV-VKYDAWDKYAKEIEQLQLN--MQNFTATVGTVERNINDMMGYQAHSRHR 186
            .:||:.  :.:|:.. |.|:..:...|:.::.|||  :.....:...|:.::..|..:...:|.|
  Rat   124 QNRFSS--IQVYLNFGVFYEGPEMDHKQSQRKQLNDTLDAIEDSTRRVQNHVFHMWRFYNSARMR 186

  Fly   187 ESRDYALLLDNNAYIQTFSISQIVVILITCSVQVFFVRKLFEVKSSSK 234
            :..|:.||..|.:|:..:|.:|.:.|:::..:|::|:::||.:.:.:|
  Rat   187 KVADFFLLQSNYSYVNWWSTAQSLAIVLSGVLQLYFLKRLFTISTDTK 234

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
loj	NP_648027.3	EMP24_GP25L	47..228	CDD:426051	42/191 (22%)
Tmed6	NP_001099653.1	EMP24_GP25L	43..227	CDD:426051	41/190 (22%)