DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssp6 and Ush1c

DIOPT Version :9

Sequence 1:NP_001286952.1 Gene:ssp6 / 38694 FlyBaseID:FBgn0035676 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_710143.2 Gene:Ush1c / 72088 MGIID:1919338 Length:910 Species:Mus musculus


Alignment Length:679 Identity:136/679 - (20%)
Similarity:218/679 - (32%) Gaps:209/679 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 SHYVNG--TGSLG--------RLKFHKSLDASDEE-IEYAQLSRSTHILGRHKSERYLASNPDED 126
            ||.:.|  ..|:|        |:..:.....:.|| |...:..::..|..||.....:.|:|:|.
Mouse   115 SHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTKKTVSIKVRHIGLIPVKSSPEES 179

  Fly   127 RR----------------------RRTIIVEKK-------NNSYGFT-----LQSYGIHYKRDEE 157
            .:                      .|| ..|||       :...|.:     :|..||       
Mouse   180 LKWQYVDQFVSESGGVRGGLGSPGNRT-TKEKKVFISLVGSRGLGCSISSGPIQKPGI------- 236

  Fly   158 LEMITYVDYVEYGGPAYRAGMREGDVILSINGKDMEKADHKTIVEFIKQCDTRMRMVV------L 216
                 :|.:|:.|..:...|:..||.|:.:||.|....|||..|..:|...:....:|      |
Mouse   237 -----FVSHVKPGSLSAEVGLETGDQIVEVNGIDFTNLDHKEAVNVLKSSRSLTISIVAGAGREL 296

  Fly   217 F-EDCVRKVDLHMRYIQLQSMLQQKMNELE-RVHLRERELLEGKWKTHSLPARKKANANTS-PSD 278
            | .|..|..:...|.:|.|.:|.||...:| ...|:|::.:|.:.:...  |:|.|..|.. ..:
Mouse   297 FMTDRERLEEARQRELQRQELLMQKRLAMESNKILQEQQEMERQRRKEI--AQKAAEENERYRKE 359

  Fly   279 GEGVSPTEVAGEAGFYRPALSTEDV---PNIAARQHGVGGPGIIPPPAQFMLTYHYLDPTYRYVL 340
            .|.:|..|...:..:.....|.|.:   ..|.|..|    |..:..|..|...|.| |..:..:.
Mouse   360 MEQISEEEEKFKKQWKEDWGSKEQLILPKTITAEVH----PVPLRKPKSFGWFYRY-DGKFPTIR 419

  Fly   341 RPTHGSSEEFVDGL-GLQRSSSDHQPPAQRY-----VLQQTESVDANSMTQPTT---------TA 390
            :......:...|.| .|:::..:.:...:.|     :|::.:.:..|.:.|..:         :.
Mouse   420 KKAKEKKKAKYDSLQDLRKNKKELEFEQKLYKEKEEMLEKEKQLKINRLAQEVSETEREDLEESE 484

  Fly   391 PTQY---------------------HSTTG-----GSVKPPAP---------------------- 407
            .|||                     ..|||     .||.|.||                      
Mouse   485 KTQYWVERLCQTRLEQISSAENEIPEMTTGPPPPPPSVSPLAPPLRRFAGGIHLHTTDLDDIPLD 549

  Fly   408 ----PPRT-----CEKH----KPPAKPPKPEKEKSSGKHCHVGHSCNPCLGHFRWKSAEKSAVPA 459
                ||:|     ...|    .||:|.|.|....|||   ||..|.:|      |.......:|.
Mouse   550 MFYYPPKTPSALPVMPHPPSVNPPSKVPAPPVLPSSG---HVSSSSSP------WVQRTPPPIPI 605

  Fly   460 PDNVSLDAYDLASPCCDTHCVPS-----------RRRHRQH-----KEHTHKHKHRDRERVESKE 508
            |...|:...||.    .|..:||           |.....|     :.:||..|.......|   
Mouse   606 PPPPSIPTQDLT----PTRPLPSALEEALGNHPFRTGDPGHPADDWEANTHSGKPSSSPTTE--- 663

  Fly   509 QRVRPKSTSHASPNANGGAGSG----------HHHHHHHHHHSHEQQQQQQQQQQQQQQQQQQQQ 563
             |..|.:.....|:.....|.|          |..|:..:..:.:.:...|:..::....|...:
Mouse   664 -RSFPPAPKTFCPSPQPPRGPGVSTISKPVMVHQEHNFVYRPAVKSEVLPQEMLKRMVVYQTAFR 727

  Fly   564 QQQPIQTVPHHHHY-----PHQMHNPCQV 587
            |.        ...|     |:.|.:|.|:
Mouse   728 QD--------FRKYEEGFDPYSMFSPEQI 748

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssp6NP_001286952.1 PDZ_signaling 130..216 CDD:238492 25/103 (24%)
Ush1cNP_710143.2 N-terminal domain. /evidence=ECO:0000250|UniProtKB:Q9Y6N9 1..86
harmonin_N 2..80 CDD:259819
PDZ_signaling 85..165 CDD:238492 10/49 (20%)
Mediates interaction with MYO7B. /evidence=ECO:0000250|UniProtKB:Q9Y6N9 194..833 121/600 (20%)
PDZ_signaling 209..289 CDD:238492 22/91 (24%)
Cgr1 <309..>358 CDD:281823 14/50 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 563..688 33/141 (23%)
PDZ_signaling 751..838 CDD:238492
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 890..910
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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