DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssp6 and lnx2b

DIOPT Version :9

Sequence 1:NP_001286952.1 Gene:ssp6 / 38694 FlyBaseID:FBgn0035676 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_998105.2 Gene:lnx2b / 564464 ZFINID:ZDB-GENE-040426-2500 Length:678 Species:Danio rerio


Alignment Length:169 Identity:39/169 - (23%)
Similarity:69/169 - (40%) Gaps:18/169 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 QHLYHQSHQQASHYVNGTGSLGRLKFHKSLDASDE----EIEYAQLSRSTHILGRHKSERYLASN 122
            |.|.|.:.:.|:..:..:.........:..|.|:|    :...|:.........||  ..|:...
Zfish   381 QDLRHGTPESAAQIIQASEMRVNFVVMRLQDVSEEGGEGQSRGARRVPEPQYFRRH--SEYMKEP 443

  Fly   123 PDE-DRRRRTIIVEKK-NNSYGFTLQSYGIHYKRDEELEMITYVDYVEYGGPAYRAG-MREGDVI 184
            |.. ..:.:|:.::|: ..|.|.|:..     .||....:..|:..|:..|..:|.| ::.|||:
Zfish   444 PGGFSSQEKTVTLKKEPRQSLGITIAG-----GRDCRSRLPVYITSVQPVGCLHRDGTVKTGDVL 503

  Fly   185 LSINGKDMEKADHKTIVEFIK----QCDTRMRMVVLFED 219
            |||||.|:....:...|..:|    |....:|::..|.|
Zfish   504 LSINGIDLTHLTYNEAVTVLKTQTAQSTVTLRVIQTFAD 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssp6NP_001286952.1 PDZ_signaling 130..216 CDD:238492 25/91 (27%)
lnx2bNP_998105.2 RING 46..82 CDD:214546
PDZ_signaling 210..291 CDD:238492
PDZ_signaling 325..406 CDD:238492 4/24 (17%)
PDZ_signaling 451..537 CDD:238492 25/90 (28%)
PDZ_signaling 587..671 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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