DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssp6 and synj2bp

DIOPT Version :9

Sequence 1:NP_001286952.1 Gene:ssp6 / 38694 FlyBaseID:FBgn0035676 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_956211.1 Gene:synj2bp / 334599 ZFINID:ZDB-GENE-030131-6531 Length:152 Species:Danio rerio


Alignment Length:77 Identity:22/77 - (28%)
Similarity:35/77 - (45%) Gaps:17/77 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 YVDYVEYGGPAYRAG-MREGDVILSINGKDMEKADHKTIVEFIKQCDTRMRMVVLFEDCVRKVDL 226
            ||..::..|.|...| ::|||.||:|||:.::...|...||..:....               |:
Zfish    43 YVAKIKENGAAALDGRLQEGDKILAINGRKLDNLSHGAAVELFRSAGE---------------DV 92

  Fly   227 HMRYIQLQSMLQ 238
            |: .||.:.:||
Zfish    93 HL-CIQQRPVLQ 103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssp6NP_001286952.1 PDZ_signaling 130..216 CDD:238492 16/53 (30%)
synj2bpNP_956211.1 PDZ_signaling 17..97 CDD:238492 18/69 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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