DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssp6 and gopc

DIOPT Version :9

Sequence 1:NP_001286952.1 Gene:ssp6 / 38694 FlyBaseID:FBgn0035676 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_956851.1 Gene:gopc / 326887 ZFINID:ZDB-GENE-030131-5086 Length:455 Species:Danio rerio


Alignment Length:222 Identity:49/222 - (22%)
Similarity:81/222 - (36%) Gaps:64/222 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 QLSRSTHILGRHKS-----------ERYLAS--NPDEDRRRRT--------IIVEKKNNSYGFTL 145
            ||....| |.|||:           ::.|.|  ..|.|..::|        :::.|:::      
Zfish   238 QLEAEIH-LHRHKTVIRACRGRNDPKKPLPSPVGHDTDSLKKTQGVGPIRKVVLTKEDH------ 295

  Fly   146 QSYGIHYKRDEELEMITYVDYVEYGGPAYR-AGMREGDVILSINGKDMEKADHKTIVEFIKQCDT 209
            :..||.....:|..:...:..:....||.| .|:..||.||::|..::..|.||..|..:.|...
Zfish   296 EGLGISITGGKEHGVPILISEIHPTQPAERCGGLHVGDAILAVNNINLRDAKHKEAVTILSQQRG 360

  Fly   210 RMRMVVLF---------EDCVRKVDLHMRYIQLQSMLQQKMNELERVHLRERELLEGKWKTH--- 262
            .:...|::         |:...:.|...||               |::|.|.|  |.....|   
Zfish   361 EIEFEVVYVAPEVDSDDENVEYEDDSGHRY---------------RLYLDELE--EASAANHNNG 408

  Fly   263 -----SLPARKKANANTSPSDGE-GVS 283
                 ||.|..|...|....:|: |:|
Zfish   409 TADPASLQAVGKHLVNNRTENGDVGLS 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssp6NP_001286952.1 PDZ_signaling 130..216 CDD:238492 19/94 (20%)
gopcNP_956851.1 PDZ_signaling 285..367 CDD:238492 18/87 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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