DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ssp6 and CG5921

DIOPT Version :9

Sequence 1:NP_001286952.1 Gene:ssp6 / 38694 FlyBaseID:FBgn0035676 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_727061.2 Gene:CG5921 / 31538 FlyBaseID:FBgn0029835 Length:886 Species:Drosophila melanogaster


Alignment Length:1084 Identity:190/1084 - (17%)
Similarity:306/1084 - (28%) Gaps:474/1084 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 TAASSAATTAAAVSISASNATSVGSLIAAACQQEQPHPHQHYSQSQQQHLYHQSHQQASHYVNGT 79
            ||||::.:|:|:::.|||...|                               |..|.|...:.:
  Fly     5 TAASASISTSASLTNSASTDCS-------------------------------SSMQGSTTSSAS 38

  Fly    80 GSLGRLKFHKSLDASDEEIEYAQLSRSTHI----LGRHKSERYLASNPDEDRRRRTIIVEKKNNS 140
            ..:..|       .:.....:..:..|:.:    |.|....|.|...|:            :.::
  Fly    39 SDVMTL-------TTTAASSWCAIPASSRLRVLRLVRPHQRRLLVGGPE------------RGST 84

  Fly   141 YGFTL---QSYGIHYKRDEELEMITYVDYVEYGGPAYRAGMREGDVILSINGKDMEKADHKTIVE 202
            ||||:   :.:|..:          :|.:||:||.|:..|:|.||.||.|||..::.|.||..::
  Fly    85 YGFTVRGGREHGTGF----------FVSHVEHGGEAHLKGLRIGDQILRINGFRLDDAVHKEFIQ 139

  Fly   203 FIKQCDTRMRMVVLFEDCVRKVDLHMRYIQLQSMLQQKMNELERVHLRERELLEGK--WKTHSLP 265
            .:...|              :|.|.:|.:.:               |..|:|.|.:  |....||
  Fly   140 LVAGQD--------------RVTLKVRGVGM---------------LPVRDLPEERLSWSVVKLP 175

  Fly   266 A-------------RKKANANTS------------------PSDGEGV-----SPTEVAGEAGFY 294
            :             |:.|:.:.|                  |....|:     ....||.|||. 
  Fly   176 SVSGTPSESSFKGERRGASRDISVVLHVAPRTKLGLGICKGPEWKPGIFVQFTKDRSVAREAGL- 239

  Fly   295 RP-----ALSTEDVPNI------------------------------------------------ 306
            ||     ::::.|..::                                                
  Fly   240 RPGDQILSVNSIDFSDVLFSEAVAVMKSSSKLDMVVRTAAGCDLFPGESSGYNSSASSVTGDQSP 304

  Fly   307 -----------AARQH---GVGGPGIIPPPAQ-------------------FMLTYH--YLDPTY 336
                       |.|:.   |.||.|:...|..                   ..||.:  .::.||
  Fly   305 CWADAKSKRLTAVREESGAGGGGCGLSSAPGAGSPNWSQGVEVHKQMNKTIIKLTENGTSINNTY 369

  Fly   337 RYVLRPTHGSSEEFVDGLGLQRSSSDHQPPAQRYVLQQTESVDANSMTQPTTTAPTQYH------ 395
               :..|.|||   |.|.|...|.:..:.       ||::|..:|.....||...:...      
  Fly   370 ---IASTGGSS---VSGSGSTGSGTSGRS-------QQSQSNPSNPSRNSTTMKRSHLRPVNSAG 421

  Fly   396 ----------------------STTGGSVKP-PAPPPRTCEKHKPPAKPPKPEKEKSSGKHCHVG 437
                                  |.:||.:.| |||||           |...|...:||.   ||
  Fly   422 SGIGLSSGSAGSAGSAGSSGSGSRSGGVIAPAPAPPP-----------PAMNEGANASGS---VG 472

  Fly   438 HSCNPCLGHFRWKSAEKSAVPAPDNVSLDAYDLASPCCDTHCVPSRRRHRQHKEHTHKHKHRDRE 502
            .|.:             ||:                   |..:..|:..:|.::|..:| :|||:
  Fly   473 SSLS-------------SAI-------------------TEELKKRKEKQQQQQHQQRH-NRDRD 504

  Fly   503 R----------------------VESKEQRVRPKSTSHASP--------------------NANG 525
            |                      |.....|.|......|:.                    .:||
  Fly   505 RDGNGNVDRQLTGHNGNGGHRSSVGQVSHRQRANVAGVAATLQGSERISNLTGGGGAGGAGGSNG 569

  Fly   526 GAGSGHHHH----------HHHHHHS--HEQQQQQQQQQQQQQQQQQQQQQQQPIQTVPHHHH-- 576
            .||:|...|          |.....:  ||.:.:.....:.....:....::..:..|.:...  
  Fly   570 AAGAGGDQHTALMDEFKRAHQRMFRNGFHESEHKLSSLGKSSLADRSLYGREMSLLRVKNGGSGG 634

  Fly   577 ----------YPHQMHNPCQVQS---QSGSTRSRYFDLASGLASHCSLHSCTSSEFATGDTASYT 628
                      .|..|..|....|   :.|.|..|...:........|::|..::.|:...:.|.|
  Fly   635 GEGSGVMPTMRPVSMGRPLVTMSTYQERGETLKRTSIMPDESCYRNSINSNNNNGFSRNRSNSNT 699

  Fly   629 TSISTDTLFWDPTSETAQSRQHSTKSRQSYEQQPQQQQPTHQGHHHHHHHQGDYHQRYHVTTTQM 693
            .  :.:.|    .|:...:..:...|.:.....||...|                          
  Fly   700 N--NNNRL----QSQNGVNPANGNGSPELPPPPPQFANP-------------------------- 732

  Fly   694 QPQQIYPNTIAYVQKPKSWDNLANKAGFNVGYGYLDTVAVKPAIKMQIAQQRHSM-PRRNPYGRY 757
            ||:|:.|..|    ||.:.:..||.:|...|.|           ...:|:.|..| |.|      
  Fly   733 QPKQMPPQHI----KPMTGNAAANGSGSANGLG-----------NGSLAKVRQPMSPMR------ 776

  Fly   758 STYGDVENYAPPPTEFVGELTTTTTTTITAKSTEELLAACDCLTPQQQAAIKAAQYQLSQNQKLS 822
            |....|..:.||.|    .........|.:....|.::..|..|.|||                 
  Fly   777 SASISVGGFRPPAT----PQPDYDAVQIRSSQGSESVSGRDVATSQQQ----------------- 820

  Fly   823 HQNSCQLGYYSHLPRPTTDVGTSTTSQQVHGAGDVQTTSEATRL 866
                          |.|..:||.|..:.    ||.:||.:...|
  Fly   821 --------------RRTLRLGTVTIGEY----GDQRTTGKRETL 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssp6NP_001286952.1 PDZ_signaling 130..216 CDD:238492 24/88 (27%)
CG5921NP_727061.2 PDZ_signaling 82..152 CDD:238492 26/93 (28%)
PDZ_signaling 197..276 CDD:238492 11/79 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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