Protein Alignment ssp6 and Ush1c

DIOPT Version :9

• Sequence 1: NP_001286952.1
• Gene: ssp6 / 38694
• FlyBaseID: FBgn0035676
• Length: 866
• Species: Drosophila melanogaster
• Sequence 2: XP_006229284.1
• Gene: Ush1c / 308596
• RGDID: 1303329
• Length: 910
• Species: Rattus norvegicus
• Alignment Length: 667
• Identity: 123/667 - (18%)
• Similarity: 212/667 - (31%)
• Gaps: 185/667 - (27%)

  Fly    73 SHYVNG--TGSLG--------RLKFHKSLDASDEE-IEYAQLSRSTHILGRHKSERYLASNPDED 126
            ||.:.|  ..|:|        |:..:.....:.|| |...:..::..|..||.....:.|:|:|.
  Rat   115 SHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTKKTVSIKVRHIGLIPVKSSPEEP 179

  Fly   127 RRRRTI--IVEKKNNSYGFTLQSYGIHYKRDEE--LEMI------------------TYVDYVEY 169
            .:.:.:  .|.:.....| .|.|.|....::::  :.::                  .:|..|:.
  Rat   180 LKWQYVDQFVSESGGVRG-GLSSPGNRTTKEKKVFISLVGSRGLGCSISSGPIQKPGIFVSNVKP 243

  Fly   170 GGPAYRAGMREGDVILSINGKDMEKADHKTIVEFIKQCDTRMRMVV------LF-EDCVRKVDLH 227
            |..:...|:..||.|:.:||.|....|||..|..:|...:....:|      || .|..|..:..
  Rat   244 GSLSAEVGLETGDQIVEVNGIDFTNLDHKEAVNVLKSSRSLTISIVAGAGRELFMTDRERLEEAR 308

  Fly   228 MRYIQLQSMLQQKMNELE-RVHLRERELLEGKWKTHSLPARKKANANTS-PSDGEGVSPTEVAGE 290
            ...:|.|.:|.||...:| ...|:|::.:|.:.:...  |:|.|..|.. ..:.|.:|..|...:
  Rat   309 QHELQRQELLMQKRLAMESNKILQEQQEMERQRRKEI--AQKAAEENERYRKEMEQISEEEEKFK 371

  Fly   291 AGFYRPALSTEDV---PNIAARQHGVGGPGIIPPPAQFMLTYHYLDPTYRYVLRPTHGSSEEFVD 352
            ..:.....|.|.:   ..|.|..|    |..:..|..|...|.| |..:..:.:......:...|
  Rat   372 KQWEEDWGSKEQLILPKTITAEVH----PVPLRKPKSFGWFYRY-DGKFPTIRKKAKEKKKAKYD 431

  Fly   353 GL-GLQRSSSDHQPPAQRY-----VLQQTESVDANSMTQPTT---------TAPTQY-------- 394
            .| .|:::..:.:...:.|     :|::.:.:..|.:.|..:         :..|||
  Rat   432 SLQDLRKNKKELEFEQKLYKEKEEMLEKEKQLKINRLAQEVSETEREDLEESEKTQYWVERLCQT 496

  Fly   395 -------------HSTTGGSVKPPAPPPRTCE--------------------------------- 413
                         ..|||    ||.|||....
  Rat   497 RLQQISSAENEITEMTTG----PPPPPPSVSPLVPPLRRFAGGIHLHTTDLDDIPLDMFYYPPKT 557

  Fly   414 -------KHKPPAKPPK----PEKEKSSGKHCHVGHSCNPCLGHFRWKSAEKSAVPAPDNVSLDA 467
                   .|.||:.||.    |....||.   |:..|.:|      |.......:|.|...|:..
  Rat   558 PSALPVMPHPPPSNPPSKVPAPPVLPSSD---HMSSSSSP------WVQHTPPPIPIPPPPSIPT 613

  Fly   468 YDLASPCCDTHCVPSRRRH--RQHKEHT----------HKHKHRDRERVESKEQRVRPKSTSHAS 520
            .||.    .|..:||....  ..|...|          ..:.|..:.......:|..|.:.....
  Rat   614 QDLT----PTRPLPSALEEVLGNHPFRTGDPGHPATDWEANTHSGKPTSSPTPERSFPPAPKTFC 674

  Fly   521 PNANGGAGSG----------HHHHHHHHHHSHEQQQQQQQQQQQQQQQQQQQQQQQPIQTVPHHH 575
            |:.....|.|          |..|:..:..:.:.:...|:..::....|...:|.        ..
  Rat   675 PSPQPPRGPGVSTISKPVMVHQEHNFVYRPAVKSEVLPQEMLKRMVVYQTAFRQD--------FR 731

  Fly   576 HY-----PHQMHNPCQV 587
            .|     |:.|.:|.|:
  Rat   732 KYEEGFDPYSMFSPEQI 748

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ssp6	NP_001286952.1	PDZ_signaling	130..216	CDD:238492	21/113 (19%)
Ush1c	XP_006229284.1	harmonin_N	2..80	CDD:259819
		PDZ_signaling	85..165	CDD:238492	10/49 (20%)
		PDZ_signaling	209..289	CDD:238492	15/79 (19%)
		Cgr1	<316..>358	CDD:281823	11/43 (26%)
		PDZ_signaling	751..838	CDD:238492

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3528
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900