DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssp6 and Stxbp4

DIOPT Version :9

Sequence 1:NP_001286952.1 Gene:ssp6 / 38694 FlyBaseID:FBgn0035676 Length:866 Species:Drosophila melanogaster
Sequence 2:XP_006247190.1 Gene:Stxbp4 / 303443 RGDID:1307903 Length:557 Species:Rattus norvegicus


Alignment Length:75 Identity:23/75 - (30%)
Similarity:36/75 - (48%) Gaps:8/75 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 ASNP-DEDRRRRTIIVEKKNNSYGFTLQSYGIHYKRDEELEMITYVDYVEYGGPAYRAG-MREGD 182
            :|:| :.|...|.|.|.|:.   |..|:..|   ..|.....:.|:..|..||..|:.| ::.||
  Rat    10 SSSPLERDPAFRVITVAKET---GLGLKILG---GIDRNEGPLVYIHEVTPGGDCYKDGRLKPGD 68

  Fly   183 VILSINGKDM 192
            .::|||.:.|
  Rat    69 QLVSINKESM 78

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssp6NP_001286952.1 PDZ_signaling 130..216 CDD:238492 20/64 (31%)
Stxbp4XP_006247190.1 PDZ_signaling 21..94 CDD:238492 20/64 (31%)
TPR_MLP1_2 299..400 CDD:285204
GBP_C <306..389 CDD:303769
coiled coil 359..369 CDD:293879
coiled coil 378..389 CDD:293879
WW 502..531 CDD:278809
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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