DRSC/TRiP Functional Genomics Resources

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Protein Alignment ssp6 and WHRN

DIOPT Version :9

Sequence 1:NP_001286952.1 Gene:ssp6 / 38694 FlyBaseID:FBgn0035676 Length:866 Species:Drosophila melanogaster
Sequence 2:XP_011516787.1 Gene:WHRN / 25861 HGNCID:16361 Length:918 Species:Homo sapiens


Alignment Length:669 Identity:137/669 - (20%)
Similarity:206/669 - (30%) Gaps:231/669 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 GRHKSERYLASNPDEDRRRRTIIVEKKNNSYGFTLQ---SYGIHYKRDEELEMITYVDYVEYGGP 172
            |..:|..:|....||   ::..:|.....|.|.|::   .||:.          .|:..|:.|..
Human   263 GDRRSTLHLLQGGDE---KKVNLVLGDGRSLGLTIRGGAEYGLG----------IYITGVDPGSE 314

  Fly   173 AYRAGMREGDVILSINGKDMEKADHKTIVEFIKQCDTRMRMVVLFEDCVRKVDLHMRYIQLQSML 237
            |..:|::.||.||.:||:......|...|..:|.    .|.::|                     
Human   315 AEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS----SRHLIL--------------------- 354

  Fly   238 QQKMNELERVHLRERELLEGKWKTHSLPARKKANANTSPSDGEGVSPTEVAGEAGFYRPALSTED 302
              .:.::.|:......:.|.||...|......||:    :...|...||...:.|||:....::.
Human   355 --TVKDVGRLPHARTTVDETKWIASSRIRETMANS----AGFLGDLTTEGINKPGFYKGPAGSQV 413

  Fly   303 VPNIAARQHGVGGPGIIPPPAQFMLT-------YHYLDPTYR-------------YVLRPTHGS- 346
            ..:....|..|    ::...|:.:|.       .:||| .||             :.|..||.. 
Human   414 TLSSLGNQTRV----LLEEQARHLLNEQEHATMAYYLD-EYRGGSVSVEALVMALFKLLNTHAKF 473

  Fly   347 ---SE----------EFVDGLGLQR---SSSDHQPPA---------------------------- 367
               ||          |..|.|.|:|   |....|||.                            
Human   474 SLLSEVRGTISPQDLERFDHLVLRREIESMKARQPPGPGAGDTYSMVSYSDTGSSTGSHGTSTTV 538

  Fly   368 ----QRYV-----------LQQT-ESVDANSMTQPTTTAPTQYHSTTGG--SVKP-PAPPPRTCE 413
                :|.:           |::| |:|..|....|..:. ....||:.|  |.|| |.|||....
Human   539 SSARERLLWLIDLMENTLDLEETGEAVQGNINALPDVSV-DDVRSTSQGLSSFKPLPRPPPLAQG 602

  Fly   414 KHKPPAKPPKPEKE----KSSGKHCHVGHSCNPCLGHFRWKSAEKSAVPAPDNVSLDAYDLASPC 474
            ...|..:|.|..:|    .||...|.......|     :.:|......|.|...|  |.||.|..
Human   603 NDLPLGQPRKLGREDLQPPSSMPSCSGTVFSAP-----QNRSPPAGTAPTPGTSS--AQDLPSSP 660

  Fly   475 CDTHCVP----SRRRHRQHKEHTHKHKHRDRERVESKEQRVRPKSTSHASPNANGG-----AGSG 530
            ......|    |:|....|....::|......||:|......|.    |.....||     :.||
Human   661 IYASVSPANPSSKRPLDAHLALVNQHPIGPFPRVQSPPHLKSPS----AEATVAGGCLLPPSPSG 721

  Fly   531 HHHHHHHHHHSHEQQQQQQQQQQQQQQQQQQQQQQQPIQTVPHHHHYPHQMHNP----------C 585
            |                                   |.||..:.|....::|.|          .
Human   722 H-----------------------------------PDQTGTNQHFVMVEVHRPDSEPDVNEVRA 751

  Fly   586 QVQSQSGSTRSRYFDLASGLASHCSLHSCTSSEFATGDTASYTTSISTDTLFWDPTSETAQSRQH 650
            ..|:::.||.|:..|                    :|.|.|..:.:.....   ..|...:.||.
Human   752 LPQTRTASTLSQLSD--------------------SGQTLSEDSGVDAGEA---EASAPGRGRQS 793

  Fly   651 -STKSRQSYEQQPQQQQPT 668
             |||||.| ::.|:.::||
Human   794 VSTKSRSS-KELPRNERPT 811

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssp6NP_001286952.1 PDZ_signaling 130..216 CDD:238492 21/88 (24%)
WHRNXP_011516787.1 HN_L-whirlin_R1_like 37..112 CDD:259822
PDZ_signaling 138..215 CDD:238492
PDZ_signaling 277..357 CDD:238492 23/119 (19%)
HN_L-whirlin_R2_like 419..499 CDD:259823 18/84 (21%)
PDZ_signaling 827..898 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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